Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-465 |
| Cow position: | chr24:12797483-12797029 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 45 |
| Conread position: | 1-732 |
| Cow position: | chr24:16649032-16648301 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 58 |
| Conread position: | 1-732 |
| Cow position: | chr24:36559802-36559080 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 129-723 |
| Cow position: | chr24:12206229-12205640 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 71 |
| Conread position: | 145-545 |
| Cow position: | chr24:40654888-40655293 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 154-731 |
| Cow position: | chr24:6538051-6538633 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 171-581 |
| Cow position: | chr24:36708374-36708794 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 171-697 |
| Cow position: | chr24:14333584-14334111 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 164 |
| Conread position: | 194-501 |
| Cow position: | chr24:12568779-12569093 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 107 |
| Conread position: | 199-574 |
| Cow position: | chr24:17313396-17313028 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 134 |
| Conread position: | 199-703 |
| Cow position: | chr24:38637694-38638196 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 227-662 |
| Cow position: | chr24:7090999-7090556 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 228-718 |
| Cow position: | chr24:6336019-6336506 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 226 |
| Conread position: | 246-731 |
| Cow position: | chr24:16472084-16472576 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 185 |
| Conread position: | 249-731 |
| Cow position: | chr24:6669955-6669470 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 181 |
| Conread position: | 266-573 |
| Cow position: | chr24:8152226-8151942 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 278-519 |
| Cow position: | chr24:43889531-43889761 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 278-730 |
| Cow position: | chr24:13302321-13301849 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 289-644 |
| Cow position: | chr24:14280848-14280487 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 290-702 |
| Cow position: | chr24:6048828-6049226 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 100 |
| Conread position: | 290-732 |
| Cow position: | chr24:14872746-14872282 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 189 |
| Conread position: | 295-558 |
| Cow position: | chr24:32332263-32332525 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 47 |
| Conread position: | 303-582 |
| Cow position: | chr24:583501-583203 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 307-722 |
| Cow position: | chr24:6168953-6169367 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 330-710 |
| Cow position: | chr24:12237513-12237900 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 33 |
| Conread position: | 354-718 |
| Cow position: | chr24:1437413-1437046 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 191 |
| Conread position: | 357-555 |
| Cow position: | chr24:17372098-17371901 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 359-703 |
| Cow position: | chr24:28922421-28922082 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 20 |
| Conread position: | 378-607 |
| Cow position: | chr24:13533207-13532976 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 378-697 |
| Cow position: | chr24:12232651-12232339 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 185 |
| Conread position: | 386-596 |
| Cow position: | chr24:37217348-37217552 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 392-730 |
| Cow position: | chr24:19833724-19834066 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr24:148280-147935 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr24:4415190-4414857 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 392-732 |
| Cow position: | chr24:12335436-12335084 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 392-732 |
| Cow position: | chr24:22971429-22971769 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 392-732 |
| Cow position: | chr24:29187622-29187965 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 393-719 |
| Cow position: | chr24:27734834-27735145 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 146, 56 |
| Conread position: | 393-732 |
| Cow position: | chr24:17696638-17696297 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 44 |
| Conread position: | 396-541 |
| Cow position: | chr24:12162199-12162341 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 398-530 |
| Cow position: | chr24:35838276-35838144 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 399-731 |
| Cow position: | chr24:32846059-32846387 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 401-730 |
| Cow position: | chr24:12130625-12130300 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 401-730 |
| Cow position: | chr24:33933715-33934047 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 8 |
| Conread position: | 401-731 |
| Cow position: | chr24:9091936-9091603 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 14 |
| Conread position: | 401-732 |
| Cow position: | chr24:12086547-12086879 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 198 |
| Conread position: | 403-732 |
| Cow position: | chr24:12484975-12484642 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 48 |
| Conread position: | 410-732 |
| Cow position: | chr24:40549223-40549541 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 135 |
| Conread position: | 411-732 |
| Cow position: | chr24:43814115-43814439 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 141 |
| Conread position: | 419-544 |
| Cow position: | chr24:37300942-37300818 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 422-537 |
| Cow position: | chr24:19773482-19773367 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 422-681 |
| Cow position: | chr24:6434600-6434867 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 422-732 |
| Cow position: | chr24:5992867-5992550 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 196 |
| Conread position: | 422-732 |
| Cow position: | chr24:6646062-6646376 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 422-732 |
| Cow position: | chr24:13188535-13188846 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 302 |
| Conread position: | 422-732 |
| Cow position: | chr24:33738978-33738663 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 422-732 |
| Cow position: | chr24:44017895-44018209 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 423-693 |
| Cow position: | chr24:14390190-14389918 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 90 |
| Conread position: | 428-732 |
| Cow position: | chr24:6024735-6024429 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 81 |
| Conread position: | 429-638 |
| Cow position: | chr24:8030520-8030733 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 84, 188 |
| Conread position: | 429-732 |
| Cow position: | chr24:9188363-9188059 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 178 |
| Conread position: | 429-732 |
| Cow position: | chr24:22793541-22793852 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 429-732 |
| Cow position: | chr24:29305954-29305646 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 432-632 |
| Cow position: | chr24:30900750-30900555 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 438-632 |
| Cow position: | chr24:16084277-16084082 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 103, 162 |
| Conread position: | 439-731 |
| Cow position: | chr24:1449638-1449918 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 123 |
| Conread position: | 447-732 |
| Cow position: | chr24:7061781-7062070 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 452-722 |
| Cow position: | chr24:6084463-6084737 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 453-731 |
| Cow position: | chr24:12796815-12796548 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 460-730 |
| Cow position: | chr24:6660095-6659821 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 469-719 |
| Cow position: | chr24:23185053-23184798 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 57, 159 |
| Conread position: | 471-732 |
| Cow position: | chr24:14754590-14754324 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 477-732 |
| Cow position: | chr24:6145851-6146084 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 482-732 |
| Cow position: | chr24:23505440-23505190 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 177 |
| Conread position: | 499-732 |
| Cow position: | chr24:35870223-35869996 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 106, 54 |
| Conread position: | 515-732 |
| Cow position: | chr24:12110236-12110030 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 540-732 |
| Cow position: | chr24:6328831-6328637 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 545-732 |
| Cow position: | chr24:6059386-6059574 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 550-732 |
| Cow position: | chr24:9544555-9544739 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 567-732 |
| Cow position: | chr24:12700310-12700142 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 627-732 |
| Cow position: | chr24:8030860-8030965 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 627-732 |
| Cow position: | chr24:11866903-11866798 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.