Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-161 |
| Cow position: | chr25:18093251-18093406 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 170-719 |
| Cow position: | chr25:11933038-11932479 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 115 |
| Conread position: | 227-721 |
| Cow position: | chr25:18254832-18254356 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 252-619 |
| Cow position: | chr25:18094354-18094724 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 111 |
| Conread position: | 262-607 |
| Cow position: | chr25:23344745-23344386 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 295-542 |
| Cow position: | chr25:20494930-20495173 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 295-697 |
| Cow position: | chr25:3378147-3377753 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 74 |
| Conread position: | 303-728 |
| Cow position: | chr25:16552620-16552198 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 275 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 303-732 |
| Cow position: | chr25:18422237-18422662 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 25 |
| Conread position: | 319-704 |
| Cow position: | chr25:24217211-24216824 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 328-580 |
| Cow position: | chr25:33665446-33665196 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 373-731 |
| Cow position: | chr25:18274704-18274341 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 7 |
| Conread position: | 386-722 |
| Cow position: | chr25:27365144-27365483 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 392-731 |
| Cow position: | chr25:12942405-12942062 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr25:18889720-18889379 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr25:26279554-26279879 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 393-699 |
| Cow position: | chr25:17560340-17560032 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 23 |
| Conread position: | 393-724 |
| Cow position: | chr25:34346721-34346387 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 394-544 |
| Cow position: | chr25:18027147-18026997 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 401-515 |
| Cow position: | chr25:14016470-14016584 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 401-530 |
| Cow position: | chr25:17468397-17468268 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-695 |
| Cow position: | chr25:9544366-9544661 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 401-728 |
| Cow position: | chr25:8675221-8675550 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 15 |
| Conread position: | 401-732 |
| Cow position: | chr25:13781335-13781669 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 401-732 |
| Cow position: | chr25:26879504-26879827 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 401-732 |
| Cow position: | chr25:34014183-34013844 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 402-732 |
| Cow position: | chr25:24659559-24659886 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 404-730 |
| Cow position: | chr25:18303706-18304036 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 409-732 |
| Cow position: | chr25:6172208-6172535 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 409-732 |
| Cow position: | chr25:13550725-13550398 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 410-574 |
| Cow position: | chr25:35362124-35361957 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 411-732 |
| Cow position: | chr25:17589247-17588921 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 411-732 |
| Cow position: | chr25:18194791-18194468 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 188 |
| Conread position: | 422-732 |
| Cow position: | chr25:27022248-27021937 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 171 |
| Conread position: | 429-732 |
| Cow position: | chr25:32580290-32580596 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 441-731 |
| Cow position: | chr25:33244607-33244887 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 46 |
| Conread position: | 447-732 |
| Cow position: | chr25:19917427-19917716 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 463-569 |
| Cow position: | chr25:25507035-25507142 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 466-731 |
| Cow position: | chr25:22147907-22148174 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 91 |
| Conread position: | 469-732 |
| Cow position: | chr25:20775555-20775293 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 231 |
| Conread position: | 471-732 |
| Cow position: | chr25:12758715-12758456 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 196, 68 |
| Conread position: | 477-731 |
| Cow position: | chr25:40918780-40918523 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 491-732 |
| Cow position: | chr25:18175671-18175912 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 499-732 |
| Cow position: | chr25:39558020-39557788 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 25 |
| Conread position: | 512-732 |
| Cow position: | chr25:20630045-20630268 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 200 |
| Conread position: | 555-731 |
| Cow position: | chr25:46205-46382 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 586-732 |
| Cow position: | chr25:25507191-25507339 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 587-732 |
| Cow position: | chr25:33664732-33664585 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 17, 99 |
Show alignments to all cow chromosomes.