Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-284 |
| Cow position: | chr27:8561740-8562019 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 107, 60 |
| Conread position: | 1-728 |
| Cow position: | chr27:26555805-26555074 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 192-661 |
| Cow position: | chr27:1138450-1138902 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 278-712 |
| Cow position: | chr27:27498737-27499159 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 284-553 |
| Cow position: | chr27:27196486-27196220 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 254, 37 |
| Conread position: | 289-704 |
| Cow position: | chr27:22148216-22148637 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 296-547 |
| Cow position: | chr27:6009878-6010125 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 324-697 |
| Cow position: | chr27:6013981-6014339 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 329-573 |
| Cow position: | chr27:8567914-8568156 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 212, 99 |
| Conread position: | 340-728 |
| Cow position: | chr27:28891805-28892189 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 348-582 |
| Cow position: | chr27:16043880-16043642 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 372-732 |
| Cow position: | chr27:23335395-23335757 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 392-732 |
| Cow position: | chr27:893460-893804 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr27:9992950-9992607 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr27:14460203-14459860 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 392-732 |
| Cow position: | chr27:15638117-15637777 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 394-544 |
| Cow position: | chr27:16439582-16439736 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 394-732 |
| Cow position: | chr27:15541579-15541919 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 10 |
| Conread position: | 397-732 |
| Cow position: | chr27:9329983-9330318 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 38 |
| Conread position: | 399-732 |
| Cow position: | chr27:16034142-16033804 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 399-732 |
| Cow position: | chr27:25804644-25804319 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 117 |
| Conread position: | 401-724 |
| Cow position: | chr27:5911126-5911450 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 401-732 |
| Cow position: | chr27:1209614-1209946 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 401-732 |
| Cow position: | chr27:15277810-15277473 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 411-722 |
| Cow position: | chr27:28078719-28079031 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 411-732 |
| Cow position: | chr27:27752931-27752617 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 233 |
| Conread position: | 459-732 |
| Cow position: | chr27:16612599-16612325 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 463-695 |
| Cow position: | chr27:27663265-27663501 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 463-732 |
| Cow position: | chr27:15037268-15036996 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 236 |
| Conread position: | 463-732 |
| Cow position: | chr27:15046493-15046763 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 465-655 |
| Cow position: | chr27:28080623-28080810 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 475-732 |
| Cow position: | chr27:26325402-26325663 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 477-665 |
| Cow position: | chr27:22318083-22318275 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 547-697 |
| Cow position: | chr27:27196198-27196052 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.