Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-291
Cow position: chr28:2989462-2989179 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 105, 42

Conread position: 1-449
Cow position: chr28:7817382-7817822 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 63

Conread position: 1-571
Cow position: chr28:21359245-21359816 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 68

Conread position: 1-687
Cow position: chr28:10071223-10071878 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 68

Conread position: 1-732
Cow position: chr28:5797675-5798380 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 42

Conread position: 1-732
Cow position: chr28:7790041-7789311 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 55

Conread position: 10-474
Cow position: chr28:5764499-5764955 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 323
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 268, 77

Conread position: 19-731
Cow position: chr28:5812950-5813649 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 50

Conread position: 133-426
Cow position: chr28:28117862-28118161 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 129, 258

Conread position: 160-391
Cow position: chr28:11356989-11356752 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 117, 0

Conread position: 171-711
Cow position: chr28:6656443-6655895 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 172-515
Cow position: chr28:29092492-29092146 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 232
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 51, 17

Conread position: 185-688
Cow position: chr28:10647295-10646798 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 28

Conread position: 233-466
Cow position: chr28:24704371-24704609 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 231

Conread position: 261-675
Cow position: chr28:14913676-14914100 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 160

Conread position: 262-730
Cow position: chr28:10497852-10497387 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 61

Conread position: 278-596
Cow position: chr28:10617636-10617326 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 100

Conread position: 283-617
Cow position: chr28:32330510-32330191 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 7

Conread position: 283-732
Cow position: chr28:2989048-2988602 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 99

Conread position: 291-522
Cow position: chr28:29436669-29436437 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 102

Conread position: 291-697
Cow position: chr28:5801186-5801599 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 278
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 86, 75

Conread position: 296-500
Cow position: chr28:8721148-8720946 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 18, 150

Conread position: 296-702
Cow position: chr28:10230015-10229610 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 46

Conread position: 299-485
Cow position: chr28:14946845-14947026 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 152
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 84, 0

Conread position: 307-723
Cow position: chr28:26489519-26489934 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 282
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 26, 97

Conread position: 324-701
Cow position: chr28:29446882-29446500 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 257
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 34, 50

Conread position: 327-703
Cow position: chr28:3020504-3020142 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 59

Conread position: 353-695
Cow position: chr28:28438836-28439188 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 227
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 76

Conread position: 378-630
Cow position: chr28:12229909-12229662 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 60

Conread position: 392-587
Cow position: chr28:14705374-14705177 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-680
Cow position: chr28:29820031-29820322 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-696
Cow position: chr28:7740778-7741080 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-696
Cow position: chr28:17667000-17666694 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-724
Cow position: chr28:5937773-5938112 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-728
Cow position: chr28:34594276-34594615 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-729
Cow position: chr28:1814570-1814231 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-731
Cow position: chr28:5566442-5566789 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr28:1505161-1505506 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position: chr28:5114001-5113660 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr28:5751408-5751068 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr28:12150601-12150941 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr28:13460267-13460608 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr28:17388779-17389123 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position: chr28:22260853-22260515 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 46

Conread position: 392-732
Cow position: chr28:26425954-26425610 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr28:32792083-32791739 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr28:33252609-33252946 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 393-704
Cow position: chr28:10581686-10581371 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 393-731
Cow position: chr28:782693-783031 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 393-732
Cow position: chr28:7002288-7002632 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 396-732
Cow position: chr28:12409926-12409590 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 43

Conread position: 398-731
Cow position: chr28:2083898-2084229 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 41

Conread position: 401-536
Cow position: chr28:7901669-7901804 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 14

Conread position: 401-537
Cow position: chr28:9954440-9954571 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 14

Conread position: 401-730
Cow position: chr28:1387098-1386764 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 41

Conread position: 401-732
Cow position: chr28:1167574-1167241 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 31

Conread position: 401-732
Cow position: chr28:18520152-18519809 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 37

Conread position: 401-732
Cow position: chr28:22233101-22232765 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 409-553
Cow position: chr28:30805380-30805234 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 132, 0

Conread position: 411-689
Cow position: chr28:485253-484971 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-732
Cow position: chr28:1953439-1953766 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-732
Cow position: chr28:6780024-6779703 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 31

Conread position: 422-732
Cow position: chr28:14750867-14751180 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 86

Conread position: 429-732
Cow position: chr28:6538934-6538627 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 429-732
Cow position: chr28:7822585-7822892 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 431-708
Cow position: chr28:24667946-24668216 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 89

Conread position: 442-728
Cow position: chr28:21944688-21944406 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 190
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 104

Conread position: 446-732
Cow position: chr28:3191895-3191615 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 75

Conread position: 447-732
Cow position: chr28:2724577-2724288 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 457-708
Cow position: chr28:8720937-8720681 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 459-640
Cow position: chr28:24588447-24588634 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 459-732
Cow position: chr28:24589209-24589488 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 464-731
Cow position: chr28:28473016-28473283 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 175
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 138, 54

Conread position: 469-732
Cow position: chr28:14195319-14195052 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 72, 169

Conread position: 470-672
Cow position: chr28:24704874-24705075 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 134, 71

Conread position: 472-695
Cow position: chr28:18100846-18100622 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 68, 77

Conread position: 474-653
Cow position: chr28:7882019-7881837 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 67, 90

Conread position: 491-732
Cow position: chr28:5765158-5765394 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 24

Conread position: 503-654
Cow position: chr28:7880930-7881085 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 530-732
Cow position: chr28:8379268-8379473 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 130

Conread position: 540-696
Cow position: chr28:7810946-7811101 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 58

Conread position: 557-732
Cow position: chr28:21359939-21360116 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 47, 0

Conread position: 586-732
Cow position: chr28:14704897-14704752 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 594-698
Cow position: chr28:10617287-10617185 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 6, 0

Show alignments to all cow chromosomes.