Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-291 |
| Cow position: | chr28:2989462-2989179 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 1-449 |
| Cow position: | chr28:7817382-7817822 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 1-571 |
| Cow position: | chr28:21359245-21359816 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 68 |
| Conread position: | 1-687 |
| Cow position: | chr28:10071223-10071878 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 1-732 |
| Cow position: | chr28:5797675-5798380 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 1-732 |
| Cow position: | chr28:7790041-7789311 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 10-474 |
| Cow position: | chr28:5764499-5764955 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 268, 77 |
| Conread position: | 19-731 |
| Cow position: | chr28:5812950-5813649 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 133-426 |
| Cow position: | chr28:28117862-28118161 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 129, 258 |
| Conread position: | 160-391 |
| Cow position: | chr28:11356989-11356752 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 171-711 |
| Cow position: | chr28:6656443-6655895 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 172-515 |
| Cow position: | chr28:29092492-29092146 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 185-688 |
| Cow position: | chr28:10647295-10646798 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 233-466 |
| Cow position: | chr28:24704371-24704609 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 231 |
| Conread position: | 261-675 |
| Cow position: | chr28:14913676-14914100 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 160 |
| Conread position: | 262-730 |
| Cow position: | chr28:10497852-10497387 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 278-596 |
| Cow position: | chr28:10617636-10617326 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 283-617 |
| Cow position: | chr28:32330510-32330191 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 283-732 |
| Cow position: | chr28:2989048-2988602 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 99 |
| Conread position: | 291-522 |
| Cow position: | chr28:29436669-29436437 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 291-697 |
| Cow position: | chr28:5801186-5801599 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 278 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 86, 75 |
| Conread position: | 296-500 |
| Cow position: | chr28:8721148-8720946 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 150 |
| Conread position: | 296-702 |
| Cow position: | chr28:10230015-10229610 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 46 |
| Conread position: | 299-485 |
| Cow position: | chr28:14946845-14947026 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 152 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 307-723 |
| Cow position: | chr28:26489519-26489934 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 324-701 |
| Cow position: | chr28:29446882-29446500 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 327-703 |
| Cow position: | chr28:3020504-3020142 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 59 |
| Conread position: | 353-695 |
| Cow position: | chr28:28438836-28439188 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 378-630 |
| Cow position: | chr28:12229909-12229662 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 392-587 |
| Cow position: | chr28:14705374-14705177 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-680 |
| Cow position: | chr28:29820031-29820322 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-696 |
| Cow position: | chr28:7740778-7741080 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-696 |
| Cow position: | chr28:17667000-17666694 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-724 |
| Cow position: | chr28:5937773-5938112 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-728 |
| Cow position: | chr28:34594276-34594615 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-729 |
| Cow position: | chr28:1814570-1814231 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-731 |
| Cow position: | chr28:5566442-5566789 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr28:1505161-1505506 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr28:5114001-5113660 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr28:5751408-5751068 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr28:12150601-12150941 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr28:13460267-13460608 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr28:17388779-17389123 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr28:22260853-22260515 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 46 |
| Conread position: | 392-732 |
| Cow position: | chr28:26425954-26425610 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr28:32792083-32791739 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr28:33252609-33252946 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 393-704 |
| Cow position: | chr28:10581686-10581371 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 393-731 |
| Cow position: | chr28:782693-783031 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 393-732 |
| Cow position: | chr28:7002288-7002632 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 396-732 |
| Cow position: | chr28:12409926-12409590 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 43 |
| Conread position: | 398-731 |
| Cow position: | chr28:2083898-2084229 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 41 |
| Conread position: | 401-536 |
| Cow position: | chr28:7901669-7901804 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 401-537 |
| Cow position: | chr28:9954440-9954571 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-730 |
| Cow position: | chr28:1387098-1386764 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 401-732 |
| Cow position: | chr28:1167574-1167241 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 401-732 |
| Cow position: | chr28:18520152-18519809 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 401-732 |
| Cow position: | chr28:22233101-22232765 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 409-553 |
| Cow position: | chr28:30805380-30805234 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 411-689 |
| Cow position: | chr28:485253-484971 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 411-732 |
| Cow position: | chr28:1953439-1953766 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 411-732 |
| Cow position: | chr28:6780024-6779703 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 422-732 |
| Cow position: | chr28:14750867-14751180 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 86 |
| Conread position: | 429-732 |
| Cow position: | chr28:6538934-6538627 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 429-732 |
| Cow position: | chr28:7822585-7822892 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 431-708 |
| Cow position: | chr28:24667946-24668216 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 89 |
| Conread position: | 442-728 |
| Cow position: | chr28:21944688-21944406 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 446-732 |
| Cow position: | chr28:3191895-3191615 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 75 |
| Conread position: | 447-732 |
| Cow position: | chr28:2724577-2724288 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 457-708 |
| Cow position: | chr28:8720937-8720681 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 459-640 |
| Cow position: | chr28:24588447-24588634 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 459-732 |
| Cow position: | chr28:24589209-24589488 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 464-731 |
| Cow position: | chr28:28473016-28473283 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 138, 54 |
| Conread position: | 469-732 |
| Cow position: | chr28:14195319-14195052 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 72, 169 |
| Conread position: | 470-672 |
| Cow position: | chr28:24704874-24705075 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 134, 71 |
| Conread position: | 472-695 |
| Cow position: | chr28:18100846-18100622 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 474-653 |
| Cow position: | chr28:7882019-7881837 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 67, 90 |
| Conread position: | 491-732 |
| Cow position: | chr28:5765158-5765394 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 503-654 |
| Cow position: | chr28:7880930-7881085 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 530-732 |
| Cow position: | chr28:8379268-8379473 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 540-696 |
| Cow position: | chr28:7810946-7811101 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 557-732 |
| Cow position: | chr28:21359939-21360116 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 586-732 |
| Cow position: | chr28:14704897-14704752 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 594-698 |
| Cow position: | chr28:10617287-10617185 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.