Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-193 |
| Cow position: | chr29:8331123-8330943 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 1-272 |
| Cow position: | chr29:5982998-5982736 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 1-732 |
| Cow position: | chr29:14086242-14085527 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 76 |
| Conread position: | 187-732 |
| Cow position: | chr29:802876-802328 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 221-706 |
| Cow position: | chr29:15949456-15948971 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 62 |
| Conread position: | 245-676 |
| Cow position: | chr29:9854388-9853950 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 41, 175 |
| Conread position: | 260-731 |
| Cow position: | chr29:3177450-3176996 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 7, 97 |
| Conread position: | 262-732 |
| Cow position: | chr29:105160-105639 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 137 |
| Conread position: | 265-500 |
| Cow position: | chr29:9617424-9617663 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 221 |
| Conread position: | 277-722 |
| Cow position: | chr29:8062341-8061900 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 59 |
| Conread position: | 278-532 |
| Cow position: | chr29:31488168-31488430 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 279-730 |
| Cow position: | chr29:3698164-3698601 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 304-707 |
| Cow position: | chr29:23900881-23901272 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 305-709 |
| Cow position: | chr29:11428236-11428644 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 156 |
| Conread position: | 323-731 |
| Cow position: | chr29:16016582-16016175 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 330-703 |
| Cow position: | chr29:32982556-32982941 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 107 |
| Conread position: | 330-732 |
| Cow position: | chr29:5982497-5982111 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 11 |
| Conread position: | 331-719 |
| Cow position: | chr29:16174681-16174294 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 55 |
| Conread position: | 344-686 |
| Cow position: | chr29:6212744-6213097 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 354-657 |
| Cow position: | chr29:4634172-4633854 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 30 |
| Conread position: | 360-522 |
| Cow position: | chr29:250947-251118 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 369-730 |
| Cow position: | chr29:45587125-45586763 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 392-704 |
| Cow position: | chr29:20251422-20251737 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 392-706 |
| Cow position: | chr29:38227243-38227560 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-707 |
| Cow position: | chr29:26164559-26164241 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-730 |
| Cow position: | chr29:2690163-2690505 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-731 |
| Cow position: | chr29:16022793-16023138 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr29:2100108-2100452 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 392-732 |
| Cow position: | chr29:7430956-7430617 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr29:10823706-10823369 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr29:14586185-14586523 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr29:19622984-19622641 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr29:19653371-19653722 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr29:23976103-23976441 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr29:25932281-25931937 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 392-732 |
| Cow position: | chr29:32540073-32540411 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr29:40502719-40502377 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 12 |
| Conread position: | 392-732 |
| Cow position: | chr29:45459979-45460322 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 394-731 |
| Cow position: | chr29:39079447-39079106 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 46 |
| Conread position: | 396-585 |
| Cow position: | chr29:12796114-12795934 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 396-732 |
| Cow position: | chr29:34799542-34799204 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 397-530 |
| Cow position: | chr29:16770389-16770522 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 398-696 |
| Cow position: | chr29:9643488-9643189 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 398-732 |
| Cow position: | chr29:15894589-15894250 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 399-732 |
| Cow position: | chr29:15968597-15968261 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 23 |
| Conread position: | 401-530 |
| Cow position: | chr29:34300496-34300369 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-530 |
| Cow position: | chr29:35196937-35197066 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-544 |
| Cow position: | chr29:21543096-21542953 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 401-557 |
| Cow position: | chr29:27040499-27040344 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-640 |
| Cow position: | chr29:42650538-42650781 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 401-664 |
| Cow position: | chr29:410252-409988 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 37 |
| Conread position: | 401-687 |
| Cow position: | chr29:6266228-6265938 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 37 |
| Conread position: | 401-714 |
| Cow position: | chr29:2841100-2840788 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 401-719 |
| Cow position: | chr29:21426757-21426436 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 14 |
| Conread position: | 401-730 |
| Cow position: | chr29:48207-47868 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 401-730 |
| Cow position: | chr29:43322827-43323158 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 401-732 |
| Cow position: | chr29:5957877-5958202 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 8 |
| Conread position: | 401-732 |
| Cow position: | chr29:10647978-10647649 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 37 |
| Conread position: | 401-732 |
| Cow position: | chr29:19885334-19885667 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 306 |
| Conread position: | 401-732 |
| Cow position: | chr29:42802398-42802732 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 411-732 |
| Cow position: | chr29:610337-610016 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 148 |
| Conread position: | 411-732 |
| Cow position: | chr29:669782-669458 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 206 |
| Conread position: | 416-731 |
| Cow position: | chr29:9961574-9961888 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 422-732 |
| Cow position: | chr29:13582354-13582662 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 271 |
| Conread position: | 422-732 |
| Cow position: | chr29:27980633-27980325 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 422-732 |
| Cow position: | chr29:31181701-31182004 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 98 |
| Conread position: | 428-732 |
| Cow position: | chr29:35297161-35297470 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 429-703 |
| Cow position: | chr29:16110709-16110986 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 81 |
| Conread position: | 429-731 |
| Cow position: | chr29:7844624-7844930 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 429-731 |
| Cow position: | chr29:34925772-34926077 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 429-732 |
| Cow position: | chr29:27250049-27249743 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 439-732 |
| Cow position: | chr29:18856640-18856344 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 453-708 |
| Cow position: | chr29:2950945-2950690 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 456-725 |
| Cow position: | chr29:36598265-36597992 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 83, 190 |
| Conread position: | 491-724 |
| Cow position: | chr29:9619778-9620015 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 498-691 |
| Cow position: | chr29:8775874-8775680 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 499-690 |
| Cow position: | chr29:3045996-3046189 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 58, 126 |
| Conread position: | 512-731 |
| Cow position: | chr29:251150-251377 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 567-732 |
| Cow position: | chr29:32559322-32559155 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 605-731 |
| Cow position: | chr29:16173854-16173728 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 619-732 |
| Cow position: | chr29:32803929-32804042 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.