Cow genome map


           Conread name:
           Ss1.1-rcbl0_018973.5
        

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 68
               

               Conread position:
               1-291
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               261, 68
               

               Conread position:
               1-703
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 79
               

               Conread position:
               1-731
               

               Cow position:
               
               

               Alignm length:
               744
               

               Alignm identity:
               566
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 68
               

               Conread position:
               77-630
               

               Cow position:
               
               

               Alignm length:
               564
               

               Alignm identity:
               369
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               169-702
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               351
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               251-640
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               108, 32
               

               Conread position:
               264-634
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               257
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               66, 13
               

               Conread position:
               278-696
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 40
               

               Conread position:
               278-732
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 59
               

               Conread position:
               283-695
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               270
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               23, 7
               

               Conread position:
               283-697
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               51, 7
               

               Conread position:
               284-731
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               194, 52
               

               Conread position:
               290-728
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 142
               

               Conread position:
               290-730
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               296-731
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               306
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               42, 51
               

               Conread position:
               303-537
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 85
               

               Conread position:
               316-705
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               271
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               317-720
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               264
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               102, 53
               

               Conread position:
               326-701
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               261
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               25, 31
               

               Conread position:
               328-697
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               27, 56
               

               Conread position:
               330-707
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 18
               

               Conread position:
               343-731
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               267
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               195, 47
               

               Conread position:
               354-730
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 88
               

               Conread position:
               356-731
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 14
               

               Conread position:
               357-719
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               198, 10
               

               Conread position:
               381-669
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 86
               

               Conread position:
               383-731
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               29, 114
               

               Conread position:
               391-544
               

               Cow position:
               
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 44
               

               Conread position:
               392-537
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               392-655
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-704
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               392-707
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-728
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 35
               

               Conread position:
               392-728
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 24
               

               Conread position:
               392-730
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               392-730
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-730
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               394-732
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 10
               

               Conread position:
               395-728
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               30, 21
               

               Conread position:
               398-540
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               26, 17
               

               Conread position:
               398-697
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               216
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               125, 6
               

               Conread position:
               399-732
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 39
               

               Conread position:
               401-544
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               23, 14
               

               Conread position:
               401-650
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 37
               

               Conread position:
               401-725
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               401-731
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 50
               

               Conread position:
               410-595
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               410-732
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 146
               

               Conread position:
               410-732
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 12
               

               Conread position:
               411-719
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 55
               

               Conread position:
               411-719
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 55
               

               Conread position:
               411-732
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               411-732
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               411-732
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               420-610
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               421-732
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 11
               

               Conread position:
               422-732
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               422-732
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 234
               

               Conread position:
               427-718
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               29, 118
               

               Conread position:
               428-732
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 268
               

               Conread position:
               429-556
               

               Cow position:
               
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               429-620
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               429-732
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 102
               

               Conread position:
               429-732
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               433-732
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 90
               

               Conread position:
               441-694
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 178
               

               Conread position:
               454-732
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               462-731
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               463-730
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               470-731
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               69, 151
               

               Conread position:
               479-731
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               534-731
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               534-732
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               10, 113
               

               Conread position:
               546-730
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               547-732
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               57, 147
               

               Conread position:
               604-730
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               625-732
               

               Cow position:
               
               

               Alignm length:
               108
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.