Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-281
Cow position: chr4:60264636-60264361 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 68

Conread position: 1-291
Cow position: chr4:21338071-21337789 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 261, 68

Conread position: 1-703
Cow position: chr4:28830961-28831640 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 79

Conread position: 1-731
Cow position: chr4:46664123-46664843 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 68

Conread position: 77-630
Cow position: chr4:14549667-14550204 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 369
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 68, 48

Conread position: 169-702
Cow position: chr4:54158416-54158926 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 351
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 19

Conread position: 251-640
Cow position: chr4:45256771-45256378 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 251
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 108, 32

Conread position: 264-634
Cow position: chr4:11385620-11385969 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 66, 13

Conread position: 278-696
Cow position: chr4:34184637-34184242 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 40

Conread position: 278-732
Cow position: chr4:60264287-60263837 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 59

Conread position: 283-695
Cow position: chr4:14374802-14374382 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 270
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 23, 7

Conread position: 283-697
Cow position: chr4:968756-968355 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 7

Conread position: 284-731
Cow position: chr4:45876791-45876343 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 303
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 194, 52

Conread position: 290-728
Cow position: chr4:51043375-51042933 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 142

Conread position: 290-730
Cow position: chr4:1496493-1496070 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 16

Conread position: 296-731
Cow position: chr4:44925637-44925193 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 306
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 51

Conread position: 303-537
Cow position: chr4:62566857-62567092 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 85

Conread position: 316-705
Cow position: chr4:15194528-15194906 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 271
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 54, 31

Conread position: 317-720
Cow position: chr4:38929334-38929733 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 264
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 102, 53

Conread position: 326-701
Cow position: chr4:19251472-19251844 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 261
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 25, 31

Conread position: 328-697
Cow position: chr4:13869953-13870305 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 258
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 56

Conread position: 330-707
Cow position: chr4:22472458-22472828 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 18

Conread position: 343-731
Cow position: chr4:19093366-19093746 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 195, 47

Conread position: 354-730
Cow position: chr4:14821600-14821229 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 88

Conread position: 356-731
Cow position: chr4:43454623-43454991 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 14

Conread position: 357-719
Cow position: chr4:50980179-50980526 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 234
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 198, 10

Conread position: 381-669
Cow position: chr4:12607684-12607406 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 86

Conread position: 383-731
Cow position: chr4:11837667-11837324 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 243
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 114

Conread position: 391-544
Cow position: chr4:61256885-61257037 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 44

Conread position: 392-537
Cow position: chr4:47717621-47717475 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 8, 24

Conread position: 392-655
Cow position: chr4:12587284-12587551 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-704
Cow position: chr4:16359869-16360183 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 392-707
Cow position: chr4:43881094-43881413 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-728
Cow position: chr4:18516883-18517218 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 35

Conread position: 392-728
Cow position: chr4:25599516-25599177 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 24

Conread position: 392-730
Cow position: chr4:31565318-31564981 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-730
Cow position: chr4:31669257-31669596 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-730
Cow position: chr4:44725069-44725411 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:355895-356231 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr4:6490379-6490040 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:12241232-12240886 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:17926269-17925924 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:36896353-36896697 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:41120289-41120645 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:43319661-43319317 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:45049313-45048969 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr4:48026382-48026728 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 394-732
Cow position: chr4:16326792-16326452 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 10

Conread position: 395-728
Cow position: chr4:47255011-47254689 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 30, 21

Conread position: 398-540
Cow position: chr4:66925988-66926130 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 17

Conread position: 398-697
Cow position: chr4:4176785-4177083 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 125, 6

Conread position: 399-732
Cow position: chr4:26886867-26886532 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 39

Conread position: 401-544
Cow position: chr4:11618846-11618985 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 14

Conread position: 401-650
Cow position: chr4:33493820-33494072 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 37

Conread position: 401-725
Cow position: chr4:39271398-39271063 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 216
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 401-731
Cow position: chr4:4416069-4416396 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 50

Conread position: 410-595
Cow position: chr4:602989-603178 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 11, 0

Conread position: 410-732
Cow position: chr4:13548025-13548351 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 146

Conread position: 410-732
Cow position: chr4:32212165-32212490 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 12

Conread position: 411-719
Cow position: chr4:41954472-41954783 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 55

Conread position: 411-719
Cow position: chr4:41958127-41958438 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 55

Conread position: 411-732
Cow position: chr4:3125793-3126118 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-732
Cow position: chr4:18190403-18190728 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 411-732
Cow position: chr4:18424527-18424202 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 420-610
Cow position: chr4:27333441-27333635 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 121, 0

Conread position: 421-732
Cow position: chr4:11111403-11111093 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 11

Conread position: 422-732
Cow position: chr4:100925-100611 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 422-732
Cow position: chr4:5880174-5880488 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 234

Conread position: 427-718
Cow position: chr4:64984365-64984657 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 29, 118

Conread position: 428-732
Cow position: chr4:9354761-9354454 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 268

Conread position: 429-556
Cow position: chr4:158531-158660 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 429-620
Cow position: chr4:65223518-65223323 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 112, 0

Conread position: 429-732
Cow position: chr4:1930608-1930302 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 102

Conread position: 429-732
Cow position: chr4:6268616-6268305 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 433-732
Cow position: chr4:16056621-16056923 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 90

Conread position: 441-694
Cow position: chr4:21256382-21256640 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 178

Conread position: 454-732
Cow position: chr4:33072780-33072498 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 462-731
Cow position: chr4:27295463-27295183 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 89, 0

Conread position: 463-730
Cow position: chr4:13493365-13493639 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 470-731
Cow position: chr4:6616023-6615760 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 170
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 151

Conread position: 479-731
Cow position: chr4:57984053-57984309 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 534-731
Cow position: chr4:17587537-17587345 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 130, 0

Conread position: 534-732
Cow position: chr4:29531753-29531557 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 10, 113

Conread position: 546-730
Cow position: chr4:529533-529720 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 58, 0

Conread position: 547-732
Cow position: chr4:159291-159476 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 147

Conread position: 604-730
Cow position: chr4:27333903-27334029 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 625-732
Cow position: chr4:41332929-41333036 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 93
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.