Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-161
Cow position:
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 61

Conread position: 1-161
Cow position:
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 61

Conread position: 1-265
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 68

Conread position: 1-340
Cow position:
Alignm length: 343
Alignm identity: 237
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 277, 54

Conread position: 9-722
Cow position:
Alignm length: 725
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 64

Conread position: 37-558
Cow position:
Alignm length: 528
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 33

Conread position: 124-731
Cow position:
Alignm length: 625
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 53

Conread position: 127-655
Cow position:
Alignm length: 540
Alignm identity: 335
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 21, 28

Conread position: 137-571
Cow position:
Alignm length: 454
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 260

Conread position: 137-722
Cow position:
Alignm length: 621
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 17

Conread position: 145-732
Cow position:
Alignm length: 591
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 18

Conread position: 154-703
Cow position:
Alignm length: 557
Alignm identity: 370
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 9

Conread position: 160-515
Cow position:
Alignm length: 359
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 109

Conread position: 160-523
Cow position:
Alignm length: 375
Alignm identity: 249
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 27, 99

Conread position: 160-728
Cow position:
Alignm length: 585
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 63

Conread position: 163-580
Cow position:
Alignm length: 418
Alignm identity: 289
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 110, 0

Conread position: 171-730
Cow position:
Alignm length: 572
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 156

Conread position: 185-523
Cow position:
Alignm length: 341
Alignm identity: 226
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 90, 29

Conread position: 190-732
Cow position:
Alignm length: 553
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 74

Conread position: 199-534
Cow position:
Alignm length: 348
Alignm identity: 244
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 100, 69

Conread position: 216-501
Cow position:
Alignm length: 296
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 5

Conread position: 221-531
Cow position:
Alignm length: 317
Alignm identity: 219
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 62, 136

Conread position: 241-697
Cow position:
Alignm length: 466
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 83

Conread position: 245-695
Cow position:
Alignm length: 479
Alignm identity: 321
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 88, 17

Conread position: 262-484
Cow position:
Alignm length: 229
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 77, 21

Conread position: 272-730
Cow position:
Alignm length: 477
Alignm identity: 299
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 13, 114

Conread position: 295-697
Cow position:
Alignm length: 420
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 39

Conread position: 295-730
Cow position:
Alignm length: 442
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 174

Conread position: 300-711
Cow position:
Alignm length: 425
Alignm identity: 285
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 33, 114

Conread position: 301-652
Cow position:
Alignm length: 357
Alignm identity: 236
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 61, 68

Conread position: 303-696
Cow position:
Alignm length: 404
Alignm identity: 268
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 93, 11

Conread position: 304-708
Cow position:
Alignm length: 414
Alignm identity: 261
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 45

Conread position: 307-732
Cow position:
Alignm length: 432
Alignm identity: 281
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 30, 8

Conread position: 307-732
Cow position:
Alignm length: 436
Alignm identity: 282
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 30, 99

Conread position: 316-732
Cow position:
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 72

Conread position: 334-678
Cow position:
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 49

Conread position: 355-695
Cow position:
Alignm length: 342
Alignm identity: 221
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 31

Conread position: 376-732
Cow position:
Alignm length: 362
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 23

Conread position: 388-731
Cow position:
Alignm length: 348
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 18

Conread position: 390-725
Cow position:
Alignm length: 341
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 28

Conread position: 392-544
Cow position:
Alignm length: 156
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 24

Conread position: 392-628
Cow position:
Alignm length: 254
Alignm identity: 146
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 8, 24

Conread position: 392-660
Cow position:
Alignm length: 275
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 48

Conread position: 392-722
Cow position:
Alignm length: 337
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 45

Conread position: 392-731
Cow position:
Alignm length: 344
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position:
Alignm length: 344
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 348
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 47

Conread position: 392-732
Cow position:
Alignm length: 354
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 349
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 394-732
Cow position:
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 10

Conread position: 398-539
Cow position:
Alignm length: 146
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 17

Conread position: 398-582
Cow position:
Alignm length: 187
Alignm identity: 148
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 143, 17

Conread position: 398-708
Cow position:
Alignm length: 319
Alignm identity: 204
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 58, 7

Conread position: 399-557
Cow position:
Alignm length: 162
Alignm identity: 121
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 401-530
Cow position:
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 14

Conread position: 401-544
Cow position:
Alignm length: 145
Alignm identity: 117
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 8

Conread position: 401-544
Cow position:
Alignm length: 145
Alignm identity: 114
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 23, 14

Conread position: 401-544
Cow position:
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 14

Conread position: 401-550
Cow position:
Alignm length: 153
Alignm identity: 119
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 23, 8

Conread position: 401-558
Cow position:
Alignm length: 161
Alignm identity: 131
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 14

Conread position: 401-672
Cow position:
Alignm length: 276
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 225

Conread position: 401-732
Cow position:
Alignm length: 335
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 14

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 14

Conread position: 401-732
Cow position:
Alignm length: 334
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 14

Conread position: 406-694
Cow position:
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 256

Conread position: 406-723
Cow position:
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 59

Conread position: 409-537
Cow position:
Alignm length: 130
Alignm identity: 103
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 18, 83

Conread position: 409-667
Cow position:
Alignm length: 265
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 0

Conread position: 410-732
Cow position:
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 410-732
Cow position:
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 287

Conread position: 411-556
Cow position:
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 411-718
Cow position:
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-719
Cow position:
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 110

Conread position: 411-732
Cow position:
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 236

Conread position: 422-653
Cow position:
Alignm length: 237
Alignm identity: 178
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 119, 67

Conread position: 422-732
Cow position:
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 164

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 98

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 423-719
Cow position:
Alignm length: 301
Alignm identity: 208
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 108, 11

Conread position: 429-719
Cow position:
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 429-730
Cow position:
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 161

Conread position: 429-731
Cow position:
Alignm length: 318
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 429-732
Cow position:
Alignm length: 308
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 62

Conread position: 430-542
Cow position:
Alignm length: 113
Alignm identity: 94
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 438-652
Cow position:
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 117

Conread position: 449-732
Cow position:
Alignm length: 291
Alignm identity: 207
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 61, 217

Conread position: 450-731
Cow position:
Alignm length: 285
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 451-698
Cow position:
Alignm length: 252
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 201

Conread position: 452-687
Cow position:
Alignm length: 249
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 87, 0

Conread position: 453-731
Cow position:
Alignm length: 283
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 453-732
Cow position:
Alignm length: 284
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 454-558
Cow position:
Alignm length: 107
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 454-679
Cow position:
Alignm length: 236
Alignm identity: 164
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 127

Conread position: 454-732
Cow position:
Alignm length: 283
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 15

Conread position: 462-732
Cow position:
Alignm length: 275
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 463-731
Cow position:
Alignm length: 276
Alignm identity: 197
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 58, 97

Conread position: 470-721
Cow position:
Alignm length: 255
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 220

Conread position: 479-666
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 62, 0

Conread position: 491-730
Cow position:
Alignm length: 244
Alignm identity: 181
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 55, 33

Conread position: 504-702
Cow position:
Alignm length: 204
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 505-732
Cow position:
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 511-697
Cow position:
Alignm length: 190
Alignm identity: 138
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 28, 40

Conread position: 513-728
Cow position:
Alignm length: 220
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 29, 11

Conread position: 531-722
Cow position:
Alignm length: 195
Alignm identity: 145
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 83

Conread position: 544-717
Cow position:
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 68, 46

Conread position: 548-732
Cow position:
Alignm length: 188
Alignm identity: 140
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 56, 0

Conread position: 551-732
Cow position:
Alignm length: 184
Alignm identity: 128
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 54, 134

Conread position: 551-732
Cow position:
Alignm length: 184
Alignm identity: 139
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 53, 147

Conread position: 554-702
Cow position:
Alignm length: 151
Alignm identity: 115
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 50, 70

Conread position: 555-729
Cow position:
Alignm length: 185
Alignm identity: 141
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 567-732
Cow position:
Alignm length: 168
Alignm identity: 128
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 569-717
Cow position:
Alignm length: 151
Alignm identity: 127
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 572-696
Cow position:
Alignm length: 127
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 575-731
Cow position:
Alignm length: 159
Alignm identity: 117
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 26, 43

Conread position: 590-732
Cow position:
Alignm length: 146
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 592-731
Cow position:
Alignm length: 142
Alignm identity: 122
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 0

Conread position: 603-732
Cow position:
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 614-732
Cow position:
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 8, 112

Show alignments to all cow chromosomes.