Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-161 |
| Cow position: | chr5:27059098-27058940 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 61 |
| Conread position: | 1-161 |
| Cow position: | chr5:27060001-27059843 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 61 |
| Conread position: | 1-265 |
| Cow position: | chr5:49593429-49593170 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 1-340 |
| Cow position: | chr5:40053483-40053801 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 277, 54 |
| Conread position: | 9-722 |
| Cow position: | chr5:46659744-46660445 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 37-558 |
| Cow position: | chr5:61272800-61272303 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 124-731 |
| Cow position: | chr5:28023317-28023932 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 127-655 |
| Cow position: | chr5:41358263-41357746 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 137-571 |
| Cow position: | chr5:41962121-41961683 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 260 |
| Conread position: | 137-722 |
| Cow position: | chr5:23228489-23229099 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 145-732 |
| Cow position: | chr5:27001880-27002449 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 18 |
| Conread position: | 154-703 |
| Cow position: | chr5:29435716-29435198 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 160-515 |
| Cow position: | chr5:46630176-46629832 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 109 |
| Conread position: | 160-523 |
| Cow position: | chr5:1669-2025 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 160-728 |
| Cow position: | chr5:14658804-14658234 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 163-580 |
| Cow position: | chr5:27058855-27058474 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 171-730 |
| Cow position: | chr5:39247130-39246588 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 156 |
| Conread position: | 185-523 |
| Cow position: | chr5:18117296-18116975 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 190-732 |
| Cow position: | chr5:41528879-41528341 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 199-534 |
| Cow position: | chr5:25000341-25000001 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 100, 69 |
| Conread position: | 216-501 |
| Cow position: | chr5:16103335-16103044 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 221-531 |
| Cow position: | chr5:26068404-26068094 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 62, 136 |
| Conread position: | 241-697 |
| Cow position: | chr5:41957397-41956945 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 245-695 |
| Cow position: | chr5:47074221-47074689 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 262-484 |
| Cow position: | chr5:51164308-51164534 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 272-730 |
| Cow position: | chr5:32309651-32309181 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 295-697 |
| Cow position: | chr5:14785389-14784979 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 295-730 |
| Cow position: | chr5:35525794-35526228 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 174 |
| Conread position: | 300-711 |
| Cow position: | chr5:68470765-68470347 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 33, 114 |
| Conread position: | 301-652 |
| Cow position: | chr5:61278453-61278105 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 303-696 |
| Cow position: | chr5:57715483-57715874 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 93, 11 |
| Conread position: | 304-708 |
| Cow position: | chr5:69621190-69621599 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 307-732 |
| Cow position: | chr5:29867276-29867689 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 307-732 |
| Cow position: | chr5:62360424-62360852 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 316-732 |
| Cow position: | chr5:4089065-4089488 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 334-678 |
| Cow position: | chr5:56857164-56856818 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 49 |
| Conread position: | 355-695 |
| Cow position: | chr5:62911232-62911564 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 376-732 |
| Cow position: | chr5:18663853-18664209 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 388-731 |
| Cow position: | chr5:46738500-46738157 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 18 |
| Conread position: | 390-725 |
| Cow position: | chr5:10918901-10919236 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 392-544 |
| Cow position: | chr5:25206604-25206450 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-628 |
| Cow position: | chr5:49518738-49518989 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-660 |
| Cow position: | chr5:6155141-6154869 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 392-722 |
| Cow position: | chr5:3504024-3503691 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 392-731 |
| Cow position: | chr5:55628066-55628408 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr5:415642-415299 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr5:2914528-2914868 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr5:7273908-7274249 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 47 |
| Conread position: | 392-732 |
| Cow position: | chr5:30579402-30579745 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr5:37732426-37732769 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr5:54792555-54792219 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr5:57482466-57482121 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr5:64781938-64781594 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr5:73489481-73489140 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 394-732 |
| Cow position: | chr5:10482925-10483265 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 10 |
| Conread position: | 398-539 |
| Cow position: | chr5:27651897-27651754 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 398-582 |
| Cow position: | chr5:32945961-32946146 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 143, 17 |
| Conread position: | 398-708 |
| Cow position: | chr5:22115976-22115664 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 399-557 |
| Cow position: | chr5:45182024-45181863 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 401-530 |
| Cow position: | chr5:9686337-9686208 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-544 |
| Cow position: | chr5:20971956-20971815 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 401-544 |
| Cow position: | chr5:29009443-29009586 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-544 |
| Cow position: | chr5:52805528-52805671 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-550 |
| Cow position: | chr5:38842109-38842258 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 401-558 |
| Cow position: | chr5:45700356-45700515 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 401-672 |
| Cow position: | chr5:49119191-49118918 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 225 |
| Conread position: | 401-732 |
| Cow position: | chr5:4385336-4385661 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 401-732 |
| Cow position: | chr5:31101535-31101207 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 14 |
| Conread position: | 401-732 |
| Cow position: | chr5:34696693-34697021 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 406-694 |
| Cow position: | chr5:26079133-26078847 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 256 |
| Conread position: | 406-723 |
| Cow position: | chr5:46644772-46645091 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 59 |
| Conread position: | 409-537 |
| Cow position: | chr5:28031562-28031690 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 409-667 |
| Cow position: | chr5:59482343-59482607 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 410-732 |
| Cow position: | chr5:44459573-44459900 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 410-732 |
| Cow position: | chr5:48468189-48467863 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 287 |
| Conread position: | 411-556 |
| Cow position: | chr5:47831021-47830876 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 411-718 |
| Cow position: | chr5:59060710-59061021 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 411-719 |
| Cow position: | chr5:31706666-31706979 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 411-732 |
| Cow position: | chr5:3964544-3964867 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 411-732 |
| Cow position: | chr5:4019106-4018782 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 411-732 |
| Cow position: | chr5:10776172-10775847 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 411-732 |
| Cow position: | chr5:27909180-27908855 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 411-732 |
| Cow position: | chr5:46664095-46664412 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 236 |
| Conread position: | 422-653 |
| Cow position: | chr5:24577018-24577251 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 422-732 |
| Cow position: | chr5:6588917-6588602 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 164 |
| Conread position: | 422-732 |
| Cow position: | chr5:14380252-14380560 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 98 |
| Conread position: | 422-732 |
| Cow position: | chr5:18666097-18666411 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 422-732 |
| Cow position: | chr5:23960212-23959898 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 422-732 |
| Cow position: | chr5:46776182-46776496 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 423-719 |
| Cow position: | chr5:43003212-43003501 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 108, 11 |
| Conread position: | 429-719 |
| Cow position: | chr5:10843309-10843013 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 429-730 |
| Cow position: | chr5:54932108-54931804 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 161 |
| Conread position: | 429-731 |
| Cow position: | chr5:32772592-32772909 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 429-732 |
| Cow position: | chr5:18122358-18122059 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 62 |
| Conread position: | 430-542 |
| Cow position: | chr5:58196112-58196224 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-652 |
| Cow position: | chr5:5667934-5667714 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 117 |
| Conread position: | 449-732 |
| Cow position: | chr5:51770813-51770527 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 217 |
| Conread position: | 450-731 |
| Cow position: | chr5:24098805-24099089 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 451-698 |
| Cow position: | chr5:3786064-3786314 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 201 |
| Conread position: | 452-687 |
| Cow position: | chr5:18401565-18401317 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 453-731 |
| Cow position: | chr5:4069355-4069637 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 453-732 |
| Cow position: | chr5:12643585-12643302 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 454-558 |
| Cow position: | chr5:28010741-28010847 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 454-679 |
| Cow position: | chr5:33186623-33186856 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 127 |
| Conread position: | 454-732 |
| Cow position: | chr5:48808591-48808320 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 462-732 |
| Cow position: | chr5:35300242-35300516 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 463-731 |
| Cow position: | chr5:53625744-53625474 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 470-721 |
| Cow position: | chr5:41555456-41555205 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 220 |
| Conread position: | 479-666 |
| Cow position: | chr5:59144531-59144723 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 491-730 |
| Cow position: | chr5:26084401-26084160 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 504-702 |
| Cow position: | chr5:2531445-2531648 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 505-732 |
| Cow position: | chr5:241388-241619 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 511-697 |
| Cow position: | chr5:3113646-3113830 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 513-728 |
| Cow position: | chr5:18115652-18115437 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 531-722 |
| Cow position: | chr5:58196245-58196438 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 83 |
| Conread position: | 544-717 |
| Cow position: | chr5:29761787-29761954 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 548-732 |
| Cow position: | chr5:28011886-28012073 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 551-732 |
| Cow position: | chr5:41465273-41465455 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 134 |
| Conread position: | 551-732 |
| Cow position: | chr5:45700554-45700732 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 53, 147 |
| Conread position: | 554-702 |
| Cow position: | chr5:47830830-47830681 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 555-729 |
| Cow position: | chr5:49591853-49591669 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 567-732 |
| Cow position: | chr5:46807562-46807729 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 569-717 |
| Cow position: | chr5:32946410-32946560 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 572-696 |
| Cow position: | chr5:41961464-41961338 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 575-731 |
| Cow position: | chr5:26343260-26343417 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 590-732 |
| Cow position: | chr5:4757891-4757746 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 592-731 |
| Cow position: | chr5:1341756-1341615 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 603-732 |
| Cow position: | chr5:45181856-45181727 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 614-732 |
| Cow position: | chr5:11625068-11624950 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 112 |
Show alignments to all cow chromosomes.