Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-243
Cow position:
Alignm length: 244
Alignm identity: 170
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 102, 21

Conread position: 1-278
Cow position:
Alignm length: 285
Alignm identity: 202
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 101, 68

Conread position: 1-338
Cow position:
Alignm length: 343
Alignm identity: 233
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 160, 26

Conread position: 1-464
Cow position:
Alignm length: 468
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 68

Conread position: 1-555
Cow position:
Alignm length: 566
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 75

Conread position: 1-731
Cow position:
Alignm length: 739
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 21

Conread position: 1-732
Cow position:
Alignm length: 748
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 68

Conread position: 3-161
Cow position:
Alignm length: 161
Alignm identity: 126
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 87, 64

Conread position: 3-515
Cow position:
Alignm length: 539
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 128

Conread position: 6-713
Cow position:
Alignm length: 719
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 57

Conread position: 168-703
Cow position:
Alignm length: 541
Alignm identity: 349
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 103, 53

Conread position: 171-732
Cow position:
Alignm length: 569
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 21

Conread position: 173-476
Cow position:
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 90

Conread position: 188-732
Cow position:
Alignm length: 555
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 212

Conread position: 192-706
Cow position:
Alignm length: 527
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 84

Conread position: 199-708
Cow position:
Alignm length: 521
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 381

Conread position: 199-728
Cow position:
Alignm length: 544
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 58

Conread position: 221-692
Cow position:
Alignm length: 498
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 416

Conread position: 251-470
Cow position:
Alignm length: 222
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 11

Conread position: 263-565
Cow position:
Alignm length: 307
Alignm identity: 220
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 22

Conread position: 264-477
Cow position:
Alignm length: 218
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 70, 12

Conread position: 265-724
Cow position:
Alignm length: 463
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 23

Conread position: 268-730
Cow position:
Alignm length: 473
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 55

Conread position: 271-698
Cow position:
Alignm length: 433
Alignm identity: 283
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 34, 19

Conread position: 277-731
Cow position:
Alignm length: 465
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 95

Conread position: 278-558
Cow position:
Alignm length: 283
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 29

Conread position: 278-570
Cow position:
Alignm length: 303
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 198

Conread position: 279-718
Cow position:
Alignm length: 450
Alignm identity: 283
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 69, 236

Conread position: 279-731
Cow position:
Alignm length: 461
Alignm identity: 282
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 66, 78

Conread position: 294-707
Cow position:
Alignm length: 417
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 42

Conread position: 301-471
Cow position:
Alignm length: 175
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 31, 111

Conread position: 302-697
Cow position:
Alignm length: 408
Alignm identity: 271
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 32, 88

Conread position: 302-732
Cow position:
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 23

Conread position: 308-495
Cow position:
Alignm length: 196
Alignm identity: 142
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 40

Conread position: 308-520
Cow position:
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 197, 34

Conread position: 318-473
Cow position:
Alignm length: 158
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 323-674
Cow position:
Alignm length: 368
Alignm identity: 253
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 30, 62

Conread position: 324-697
Cow position:
Alignm length: 378
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 18

Conread position: 332-702
Cow position:
Alignm length: 379
Alignm identity: 260
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 60, 73

Conread position: 333-617
Cow position:
Alignm length: 287
Alignm identity: 205
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 271, 53

Conread position: 334-732
Cow position:
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 49

Conread position: 354-729
Cow position:
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 44

Conread position: 373-723
Cow position:
Alignm length: 363
Alignm identity: 235
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 6

Conread position: 386-487
Cow position:
Alignm length: 102
Alignm identity: 86
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 391-525
Cow position:
Alignm length: 135
Alignm identity: 106
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 391-732
Cow position:
Alignm length: 348
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 48

Conread position: 391-732
Cow position:
Alignm length: 347
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 48

Conread position: 392-625
Cow position:
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-666
Cow position:
Alignm length: 282
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-703
Cow position:
Alignm length: 315
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 6

Conread position: 392-731
Cow position:
Alignm length: 354
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 27

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 350
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 50

Conread position: 392-732
Cow position:
Alignm length: 348
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 359
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 27

Conread position: 393-541
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 14

Conread position: 393-732
Cow position:
Alignm length: 343
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 45

Conread position: 394-700
Cow position:
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 121

Conread position: 394-732
Cow position:
Alignm length: 343
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 10

Conread position: 394-732
Cow position:
Alignm length: 343
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 10

Conread position: 401-530
Cow position:
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 34, 14

Conread position: 401-537
Cow position:
Alignm length: 137
Alignm identity: 115
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 401-537
Cow position:
Alignm length: 138
Alignm identity: 110
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 25, 14

Conread position: 401-721
Cow position:
Alignm length: 327
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 14

Conread position: 401-723
Cow position:
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 14

Conread position: 401-725
Cow position:
Alignm length: 339
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 14

Conread position: 401-731
Cow position:
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 14

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 401-732
Cow position:
Alignm length: 338
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 14

Conread position: 403-732
Cow position:
Alignm length: 335
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 409-669
Cow position:
Alignm length: 263
Alignm identity: 156
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 132, 190

Conread position: 409-732
Cow position:
Alignm length: 328
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 411-725
Cow position:
Alignm length: 317
Alignm identity: 224
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 193, 118

Conread position: 411-732
Cow position:
Alignm length: 327
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 413-731
Cow position:
Alignm length: 329
Alignm identity: 225
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 55, 26

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 274

Conread position: 427-732
Cow position:
Alignm length: 310
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 217

Conread position: 429-569
Cow position:
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 429-730
Cow position:
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 302

Conread position: 429-732
Cow position:
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 286

Conread position: 429-732
Cow position:
Alignm length: 308
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 432-680
Cow position:
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 438-712
Cow position:
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 96

Conread position: 438-722
Cow position:
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 77

Conread position: 439-725
Cow position:
Alignm length: 293
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 256

Conread position: 439-732
Cow position:
Alignm length: 298
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 36

Conread position: 443-732
Cow position:
Alignm length: 295
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 448-732
Cow position:
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 218

Conread position: 449-705
Cow position:
Alignm length: 260
Alignm identity: 188
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 74, 118

Conread position: 453-697
Cow position:
Alignm length: 253
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 59

Conread position: 453-731
Cow position:
Alignm length: 281
Alignm identity: 206
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 91, 27

Conread position: 454-725
Cow position:
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 71

Conread position: 454-732
Cow position:
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 37

Conread position: 455-732
Cow position:
Alignm length: 283
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 458-732
Cow position:
Alignm length: 292
Alignm identity: 200
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 64

Conread position: 463-732
Cow position:
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 256

Conread position: 469-720
Cow position:
Alignm length: 256
Alignm identity: 187
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 14, 119

Conread position: 469-732
Cow position:
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 176

Conread position: 469-732
Cow position:
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 70, 20

Conread position: 471-730
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 113

Conread position: 476-732
Cow position:
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 478-732
Cow position:
Alignm length: 269
Alignm identity: 190
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 61, 41

Conread position: 493-732
Cow position:
Alignm length: 244
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 165

Conread position: 507-732
Cow position:
Alignm length: 229
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 512-724
Cow position:
Alignm length: 216
Alignm identity: 147
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 86, 121

Conread position: 526-732
Cow position:
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 527-696
Cow position:
Alignm length: 174
Alignm identity: 138
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 99

Conread position: 536-697
Cow position:
Alignm length: 165
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 553-732
Cow position:
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 17

Conread position: 590-732
Cow position:
Alignm length: 145
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 120

Conread position: 591-703
Cow position:
Alignm length: 113
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 604-704
Cow position:
Alignm length: 102
Alignm identity: 88
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 610-731
Cow position:
Alignm length: 123
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 73, 22

Show alignments to all cow chromosomes.