Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-161
Cow position:
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 1-339
Cow position:
Alignm length: 342
Alignm identity: 228
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 181, 71

Conread position: 1-399
Cow position:
Alignm length: 425
Alignm identity: 288
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 155, 65

Conread position: 1-413
Cow position:
Alignm length: 415
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 69

Conread position: 1-464
Cow position:
Alignm length: 473
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 54

Conread position: 1-651
Cow position:
Alignm length: 670
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 246

Conread position: 1-704
Cow position:
Alignm length: 728
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 67

Conread position: 1-732
Cow position:
Alignm length: 743
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 57

Conread position: 1-732
Cow position:
Alignm length: 739
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 56

Conread position: 1-732
Cow position:
Alignm length: 738
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 81

Conread position: 21-732
Cow position:
Alignm length: 722
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 32

Conread position: 25-732
Cow position:
Alignm length: 716
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 47

Conread position: 115-278
Cow position:
Alignm length: 165
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 19

Conread position: 127-696
Cow position:
Alignm length: 579
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 40

Conread position: 163-522
Cow position:
Alignm length: 369
Alignm identity: 238
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 44, 26

Conread position: 220-728
Cow position:
Alignm length: 526
Alignm identity: 339
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 52

Conread position: 231-606
Cow position:
Alignm length: 387
Alignm identity: 251
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 7

Conread position: 241-712
Cow position:
Alignm length: 479
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 78

Conread position: 245-731
Cow position:
Alignm length: 506
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 80

Conread position: 251-649
Cow position:
Alignm length: 407
Alignm identity: 261
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 212, 16

Conread position: 251-665
Cow position:
Alignm length: 442
Alignm identity: 284
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 175, 85

Conread position: 252-719
Cow position:
Alignm length: 474
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 86

Conread position: 261-463
Cow position:
Alignm length: 204
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 46

Conread position: 278-605
Cow position:
Alignm length: 337
Alignm identity: 235
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 50, 109

Conread position: 279-726
Cow position:
Alignm length: 464
Alignm identity: 308
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 30, 44

Conread position: 284-658
Cow position:
Alignm length: 386
Alignm identity: 262
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 49, 33

Conread position: 290-695
Cow position:
Alignm length: 409
Alignm identity: 271
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 261, 46

Conread position: 291-695
Cow position:
Alignm length: 429
Alignm identity: 277
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 105

Conread position: 291-731
Cow position:
Alignm length: 452
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 81

Conread position: 295-691
Cow position:
Alignm length: 404
Alignm identity: 264
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 114

Conread position: 307-696
Cow position:
Alignm length: 404
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 86

Conread position: 307-732
Cow position:
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 21

Conread position: 343-695
Cow position:
Alignm length: 362
Alignm identity: 231
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 23, 76

Conread position: 347-624
Cow position:
Alignm length: 287
Alignm identity: 211
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 12, 60

Conread position: 350-689
Cow position:
Alignm length: 347
Alignm identity: 228
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 127, 36

Conread position: 357-654
Cow position:
Alignm length: 306
Alignm identity: 198
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 235

Conread position: 360-718
Cow position:
Alignm length: 371
Alignm identity: 233
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 137

Conread position: 362-574
Cow position:
Alignm length: 218
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 365-530
Cow position:
Alignm length: 168
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 13

Conread position: 369-695
Cow position:
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 383-731
Cow position:
Alignm length: 359
Alignm identity: 237
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 165

Conread position: 390-732
Cow position:
Alignm length: 349
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 391-732
Cow position:
Alignm length: 346
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 10

Conread position: 392-530
Cow position:
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 392-550
Cow position:
Alignm length: 160
Alignm identity: 125
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 8, 25

Conread position: 392-663
Cow position:
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-691
Cow position:
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 35

Conread position: 392-731
Cow position:
Alignm length: 345
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-731
Cow position:
Alignm length: 344
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 354
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 356
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 46

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 46

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 18

Conread position: 392-732
Cow position:
Alignm length: 350
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 23

Conread position: 392-732
Cow position:
Alignm length: 344
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 46

Conread position: 392-732
Cow position:
Alignm length: 349
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 353
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 393-544
Cow position:
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 34, 106

Conread position: 393-708
Cow position:
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 16

Conread position: 393-722
Cow position:
Alignm length: 335
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 393-731
Cow position:
Alignm length: 344
Alignm identity: 219
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 36

Conread position: 394-731
Cow position:
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 124

Conread position: 394-732
Cow position:
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 10

Conread position: 396-712
Cow position:
Alignm length: 335
Alignm identity: 217
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 24

Conread position: 396-732
Cow position:
Alignm length: 347
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 42

Conread position: 398-725
Cow position:
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 17

Conread position: 398-732
Cow position:
Alignm length: 339
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 41

Conread position: 399-731
Cow position:
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 137

Conread position: 401-657
Cow position:
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 8

Conread position: 401-722
Cow position:
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 14

Conread position: 401-723
Cow position:
Alignm length: 329
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 8

Conread position: 401-732
Cow position:
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 17

Conread position: 401-732
Cow position:
Alignm length: 338
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 37

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 401-732
Cow position:
Alignm length: 341
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 8

Conread position: 401-732
Cow position:
Alignm length: 337
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 53

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 31

Conread position: 402-618
Cow position:
Alignm length: 226
Alignm identity: 160
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 9, 171

Conread position: 402-731
Cow position:
Alignm length: 334
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 36

Conread position: 402-732
Cow position:
Alignm length: 336
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 15

Conread position: 403-697
Cow position:
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 13

Conread position: 409-732
Cow position:
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 409-732
Cow position:
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 410-722
Cow position:
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 410-732
Cow position:
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 27

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 39

Conread position: 411-732
Cow position:
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 231
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 133, 79

Conread position: 415-721
Cow position:
Alignm length: 316
Alignm identity: 208
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 131, 31

Conread position: 422-732
Cow position:
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 194

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 74

Conread position: 428-732
Cow position:
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 429-732
Cow position:
Alignm length: 309
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 429-732
Cow position:
Alignm length: 308
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 429-732
Cow position:
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 435-721
Cow position:
Alignm length: 290
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 10

Conread position: 439-552
Cow position:
Alignm length: 114
Alignm identity: 91
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 443-697
Cow position:
Alignm length: 256
Alignm identity: 168
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 94, 13

Conread position: 443-700
Cow position:
Alignm length: 271
Alignm identity: 181
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 9

Conread position: 446-701
Cow position:
Alignm length: 263
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 55

Conread position: 447-732
Cow position:
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 130

Conread position: 447-732
Cow position:
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 74

Conread position: 449-732
Cow position:
Alignm length: 288
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 237

Conread position: 453-689
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 182

Conread position: 454-725
Cow position:
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 58

Conread position: 456-699
Cow position:
Alignm length: 248
Alignm identity: 175
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 93, 24

Conread position: 456-701
Cow position:
Alignm length: 255
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 175

Conread position: 456-732
Cow position:
Alignm length: 279
Alignm identity: 197
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 158, 26

Conread position: 459-732
Cow position:
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 460-732
Cow position:
Alignm length: 278
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 463-732
Cow position:
Alignm length: 274
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 463-732
Cow position:
Alignm length: 273
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 464-732
Cow position:
Alignm length: 273
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 239

Conread position: 469-731
Cow position:
Alignm length: 264
Alignm identity: 172
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 106, 54

Conread position: 474-684
Cow position:
Alignm length: 216
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 481-730
Cow position:
Alignm length: 258
Alignm identity: 181
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 38

Conread position: 481-732
Cow position:
Alignm length: 256
Alignm identity: 192
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 60, 73

Conread position: 482-722
Cow position:
Alignm length: 250
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 156

Conread position: 485-713
Cow position:
Alignm length: 231
Alignm identity: 175
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 105, 50

Conread position: 491-732
Cow position:
Alignm length: 246
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 50, 166

Conread position: 492-723
Cow position:
Alignm length: 236
Alignm identity: 157
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 47, 67

Conread position: 529-731
Cow position:
Alignm length: 207
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 15

Conread position: 531-732
Cow position:
Alignm length: 206
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 95

Conread position: 552-732
Cow position:
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 52, 6

Conread position: 561-732
Cow position:
Alignm length: 175
Alignm identity: 139
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 586-732
Cow position:
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 603-732
Cow position:
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.