Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 169-456 |
| Cow position: | chr11:80564169-80564467 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 172-348 |
| Cow position: | chr11:10213684-10213504 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 172-402 |
| Cow position: | chr11:28643964-28644203 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 123 |
| Conread position: | 172-452 |
| Cow position: | chr11:23407341-23407626 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 172-456 |
| Cow position: | chr11:48295912-48296195 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 172-470 |
| Cow position: | chr11:55494559-55494847 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 172-472 |
| Cow position: | chr11:67615049-67614740 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 172-480 |
| Cow position: | chr11:69977857-69978159 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 198, 59 |
| Conread position: | 173-468 |
| Cow position: | chr11:40608716-40608412 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 173-471 |
| Cow position: | chr11:35153944-35153636 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 268 |
| Conread position: | 175-470 |
| Cow position: | chr11:67615362-67615069 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 69, 90 |
| Conread position: | 177-454 |
| Cow position: | chr11:2907632-2907366 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 177-456 |
| Cow position: | chr11:21844246-21843969 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 177-471 |
| Cow position: | chr11:40818751-40818444 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 177-473 |
| Cow position: | chr11:27746811-27747104 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 177-480 |
| Cow position: | chr11:62789015-62789319 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 177-480 |
| Cow position: | chr11:74316599-74316899 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 56 |
| Conread position: | 179-480 |
| Cow position: | chr11:42884891-42884592 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 180-472 |
| Cow position: | chr11:27405182-27404886 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 126 |
| Conread position: | 181-434 |
| Cow position: | chr11:34121085-34121346 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 125 |
| Conread position: | 181-456 |
| Cow position: | chr11:13061345-13061084 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 181-474 |
| Cow position: | chr11:83032568-83032864 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 185-456 |
| Cow position: | chr11:62620273-62620546 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 186-456 |
| Cow position: | chr11:52297326-52297053 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 187-446 |
| Cow position: | chr11:39499250-39499515 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 187-456 |
| Cow position: | chr11:77319310-77319582 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 188-471 |
| Cow position: | chr11:34646485-34646779 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 189-456 |
| Cow position: | chr11:17036631-17036362 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 189-456 |
| Cow position: | chr11:42296719-42296457 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 105, 53 |
| Conread position: | 189-472 |
| Cow position: | chr11:25620501-25620200 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 50, 118 |
| Conread position: | 189-472 |
| Cow position: | chr11:80923425-80923141 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 189-479 |
| Cow position: | chr11:18698776-18699062 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 190-431 |
| Cow position: | chr11:45646695-45646448 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 190-437 |
| Cow position: | chr11:30493898-30494142 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 180, 67 |
| Conread position: | 190-446 |
| Cow position: | chr11:39060701-39060445 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 190-452 |
| Cow position: | chr11:64009619-64009892 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 190-456 |
| Cow position: | chr11:47772493-47772212 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 190-469 |
| Cow position: | chr11:30192074-30192360 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 251 |
| Conread position: | 190-470 |
| Cow position: | chr11:29960195-29960475 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 190-470 |
| Cow position: | chr11:64044141-64044400 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 190-471 |
| Cow position: | chr11:27248392-27248672 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 62, 101 |
| Conread position: | 190-471 |
| Cow position: | chr11:67600682-67600962 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 190-472 |
| Cow position: | chr11:1625324-1625037 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 190-472 |
| Cow position: | chr11:20238571-20238861 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 49, 218 |
| Conread position: | 190-478 |
| Cow position: | chr11:2917686-2917403 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 101, 114 |
| Conread position: | 190-478 |
| Cow position: | chr11:44031902-44032196 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 190-480 |
| Cow position: | chr11:35213267-35212971 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 190-480 |
| Cow position: | chr11:50152916-50152620 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 190-480 |
| Cow position: | chr11:53773577-53773876 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 190-480 |
| Cow position: | chr11:55052780-55053057 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 191-401 |
| Cow position: | chr11:47545031-47545239 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 191-437 |
| Cow position: | chr11:31410984-31410729 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 196-442 |
| Cow position: | chr11:259267-259020 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 198-456 |
| Cow position: | chr11:71390656-71390404 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 198-472 |
| Cow position: | chr11:55911727-55911462 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 198-480 |
| Cow position: | chr11:30830708-30830431 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 182 |
| Conread position: | 203-450 |
| Cow position: | chr11:11558080-11558336 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 203-476 |
| Cow position: | chr11:35580170-35580450 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 203-480 |
| Cow position: | chr11:63999177-63998897 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 35, 85 |
| Conread position: | 204-449 |
| Cow position: | chr11:17083397-17083151 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 204-455 |
| Cow position: | chr11:33409347-33409097 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 204-470 |
| Cow position: | chr11:48085829-48086101 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 207-471 |
| Cow position: | chr11:82740424-82740676 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 209-343 |
| Cow position: | chr11:54218635-54218767 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 209-410 |
| Cow position: | chr11:26845676-26845471 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 209-437 |
| Cow position: | chr11:62813033-62812801 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 209-456 |
| Cow position: | chr11:72292461-72292731 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 209-470 |
| Cow position: | chr11:52380955-52380689 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 209-472 |
| Cow position: | chr11:16342312-16342058 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 210-480 |
| Cow position: | chr11:17721885-17721607 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 232-456 |
| Cow position: | chr11:18851851-18852073 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 120, 5 |
| Conread position: | 233-477 |
| Cow position: | chr11:1932549-1932298 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 242-470 |
| Cow position: | chr11:21885784-21886013 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 253-456 |
| Cow position: | chr11:30895040-30894833 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 5 |
Show alignments to all cow chromosomes.