Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-448 |
| Cow position: | chr12:24116505-24116233 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 172-459 |
| Cow position: | chr12:33851218-33851506 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 172-470 |
| Cow position: | chr12:17879444-17879144 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 172-472 |
| Cow position: | chr12:18518526-18518835 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 20, 126 |
| Conread position: | 172-480 |
| Cow position: | chr12:42685088-42684765 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 181-431 |
| Cow position: | chr12:43942341-43942595 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 179 |
| Conread position: | 181-456 |
| Cow position: | chr12:32169409-32169694 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 181-472 |
| Cow position: | chr12:39486297-39486592 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 148, 27 |
| Conread position: | 184-410 |
| Cow position: | chr12:27037578-27037347 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 184-447 |
| Cow position: | chr12:5632009-5631745 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 184-479 |
| Cow position: | chr12:9767007-9766711 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 61, 121 |
| Conread position: | 186-452 |
| Cow position: | chr12:17269673-17269945 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 186-480 |
| Cow position: | chr12:7902928-7902635 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 189-472 |
| Cow position: | chr12:25917391-25917113 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 176, 39 |
| Conread position: | 189-472 |
| Cow position: | chr12:36544772-36544482 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 179 |
| Conread position: | 190-437 |
| Cow position: | chr12:11056753-11057000 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 190-440 |
| Cow position: | chr12:37770755-37770998 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 190-452 |
| Cow position: | chr12:15122201-15122469 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 213 |
| Conread position: | 190-452 |
| Cow position: | chr12:22285240-22284977 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 104, 53 |
| Conread position: | 190-455 |
| Cow position: | chr12:37170064-37169802 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 190-456 |
| Cow position: | chr12:16670144-16670414 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 190-470 |
| Cow position: | chr12:30170547-30170813 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 190-472 |
| Cow position: | chr12:17031494-17031772 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 190-472 |
| Cow position: | chr12:20777044-20776766 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 190-480 |
| Cow position: | chr12:7884803-7884508 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 192-480 |
| Cow position: | chr12:11659805-11660097 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 194-480 |
| Cow position: | chr12:18421040-18420748 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 196-470 |
| Cow position: | chr12:19261077-19261356 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 196-473 |
| Cow position: | chr12:6469176-6468909 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 198-470 |
| Cow position: | chr12:25561257-25561527 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 92 |
| Conread position: | 201-470 |
| Cow position: | chr12:25343672-25343945 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 143, 42 |
| Conread position: | 203-455 |
| Cow position: | chr12:18577730-18577974 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 203-456 |
| Cow position: | chr12:13643125-13643383 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 203-456 |
| Cow position: | chr12:28789936-28790205 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 203-470 |
| Cow position: | chr12:3371652-3371384 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 203-480 |
| Cow position: | chr12:15089405-15089687 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 203-480 |
| Cow position: | chr12:18583101-18582828 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 204-456 |
| Cow position: | chr12:9143280-9143532 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 212-425 |
| Cow position: | chr12:37514382-37514168 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 94 |
| Conread position: | 218-456 |
| Cow position: | chr12:33948808-33949048 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 220-447 |
| Cow position: | chr12:26777283-26777055 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 221-473 |
| Cow position: | chr12:5554426-5554173 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 232-471 |
| Cow position: | chr12:5839736-5839499 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 233-452 |
| Cow position: | chr12:17252277-17252059 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 237-455 |
| Cow position: | chr12:12232809-12233028 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 242-480 |
| Cow position: | chr12:18123600-18123837 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 48 |
| Conread position: | 246-480 |
| Cow position: | chr12:36261624-36261867 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.