Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-437 |
| Cow position: | chr13:20666299-20666567 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 63, 122 |
| Conread position: | 172-438 |
| Cow position: | chr13:23479115-23478846 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 172-452 |
| Cow position: | chr13:54388931-54389214 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 172-455 |
| Cow position: | chr13:17114290-17114580 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 172-455 |
| Cow position: | chr13:24586129-24585849 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 71, 105 |
| Conread position: | 172-456 |
| Cow position: | chr13:19022363-19022064 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 172-461 |
| Cow position: | chr13:20288418-20288134 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 172-472 |
| Cow position: | chr13:12670360-12670667 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 172-473 |
| Cow position: | chr13:21135812-21136128 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 301 |
| Conread position: | 172-480 |
| Cow position: | chr13:7265037-7265328 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 174-400 |
| Cow position: | chr13:18696930-18696695 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 175-338 |
| Cow position: | chr13:47022446-47022285 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 175-472 |
| Cow position: | chr13:42200704-42200405 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 176-452 |
| Cow position: | chr13:15288843-15289115 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 177-456 |
| Cow position: | chr13:45023131-45023423 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 177-456 |
| Cow position: | chr13:46329523-46329803 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 115 |
| Conread position: | 177-469 |
| Cow position: | chr13:17021648-17021939 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 179-456 |
| Cow position: | chr13:35557027-35557311 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 181-472 |
| Cow position: | chr13:25817605-25817314 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 186-456 |
| Cow position: | chr13:49503458-49503738 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 9, 120 |
| Conread position: | 186-470 |
| Cow position: | chr13:35659826-35659541 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 57 |
| Conread position: | 186-480 |
| Cow position: | chr13:14063446-14063744 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 187-456 |
| Cow position: | chr13:29831367-29831627 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 187-472 |
| Cow position: | chr13:21170600-21170313 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 189-480 |
| Cow position: | chr13:152029-151745 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 190-398 |
| Cow position: | chr13:55316121-55316341 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 190-400 |
| Cow position: | chr13:18172406-18172190 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 190-437 |
| Cow position: | chr13:35526136-35526380 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 53 |
| Conread position: | 190-452 |
| Cow position: | chr13:18852148-18851892 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 190-455 |
| Cow position: | chr13:971825-972096 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 117 |
| Conread position: | 190-455 |
| Cow position: | chr13:13320862-13320598 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 190-456 |
| Cow position: | chr13:12974871-12974615 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 180, 58 |
| Conread position: | 190-456 |
| Cow position: | chr13:20784662-20784394 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 48, 118 |
| Conread position: | 190-461 |
| Cow position: | chr13:11260338-11260073 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 43, 92 |
| Conread position: | 190-468 |
| Cow position: | chr13:19279164-19278884 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 190-470 |
| Cow position: | chr13:61976897-61977171 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 51 |
| Conread position: | 190-471 |
| Cow position: | chr13:15194664-15194936 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 115 |
| Conread position: | 190-471 |
| Cow position: | chr13:22085676-22085946 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 190-471 |
| Cow position: | chr13:55674141-55674424 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 190-472 |
| Cow position: | chr13:17569032-17569312 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 190-472 |
| Cow position: | chr13:30258916-30258633 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 190-473 |
| Cow position: | chr13:20473614-20473893 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 104, 100 |
| Conread position: | 190-473 |
| Cow position: | chr13:44278419-44278125 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 190-474 |
| Cow position: | chr13:17821200-17821477 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 190-478 |
| Cow position: | chr13:17292065-17292352 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 190-478 |
| Cow position: | chr13:43480125-43479840 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 190-480 |
| Cow position: | chr13:18058178-18058472 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 190-480 |
| Cow position: | chr13:54702255-54701959 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 113 |
| Conread position: | 196-480 |
| Cow position: | chr13:11103129-11103434 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 198-456 |
| Cow position: | chr13:41806835-41806576 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 43, 180 |
| Conread position: | 198-456 |
| Cow position: | chr13:48597969-48597709 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 105 |
| Conread position: | 198-469 |
| Cow position: | chr13:8374712-8374973 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 198-469 |
| Cow position: | chr13:18197547-18197820 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 198-471 |
| Cow position: | chr13:20314559-20314839 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 209 |
| Conread position: | 198-480 |
| Cow position: | chr13:21288026-21288307 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 172, 51 |
| Conread position: | 198-480 |
| Cow position: | chr13:24369642-24369364 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 201-455 |
| Cow position: | chr13:21171517-21171771 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 203-472 |
| Cow position: | chr13:19882980-19883249 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 203-480 |
| Cow position: | chr13:5671535-5671809 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 204-456 |
| Cow position: | chr13:19393348-19393096 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 205-480 |
| Cow position: | chr13:17089470-17089736 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 209-400 |
| Cow position: | chr13:23856261-23856065 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 75 |
| Conread position: | 209-456 |
| Cow position: | chr13:23667303-23667057 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 209-457 |
| Cow position: | chr13:15257320-15257568 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 162, 124 |
| Conread position: | 209-469 |
| Cow position: | chr13:21242035-21242288 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 209-470 |
| Cow position: | chr13:52477597-52477858 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 209-477 |
| Cow position: | chr13:17611501-17611770 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 213-456 |
| Cow position: | chr13:20217350-20217598 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 215-456 |
| Cow position: | chr13:55494477-55494719 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 234-456 |
| Cow position: | chr13:56535480-56535267 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 236-472 |
| Cow position: | chr13:57985917-57986149 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 243-471 |
| Cow position: | chr13:1462282-1462506 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 52 |
Show alignments to all cow chromosomes.