Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 171-476 |
| Cow position: | chr15:3700093-3700400 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 172-449 |
| Cow position: | chr15:33643281-33643001 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 172-456 |
| Cow position: | chr15:5420693-5420979 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 172-456 |
| Cow position: | chr15:24967980-24967704 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 172-456 |
| Cow position: | chr15:51307488-51307767 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 172-472 |
| Cow position: | chr15:36259411-36259709 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 183 |
| Conread position: | 173-455 |
| Cow position: | chr15:14888450-14888733 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 166 |
| Conread position: | 177-480 |
| Cow position: | chr15:52317242-52316940 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 180-460 |
| Cow position: | chr15:26079180-26079446 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 109, 66 |
| Conread position: | 180-480 |
| Cow position: | chr15:16261497-16261209 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 188-456 |
| Cow position: | chr15:27973044-27973303 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 189-398 |
| Cow position: | chr15:42788975-42789188 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 189-456 |
| Cow position: | chr15:5730114-5729859 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 190-343 |
| Cow position: | chr15:13515540-13515385 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 190-410 |
| Cow position: | chr15:6530676-6530900 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 104, 100 |
| Conread position: | 190-449 |
| Cow position: | chr15:36353840-36353579 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 190-455 |
| Cow position: | chr15:47042456-47042739 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 190-456 |
| Cow position: | chr15:12304813-12304542 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 61, 103 |
| Conread position: | 190-457 |
| Cow position: | chr15:23275707-23275435 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 190-471 |
| Cow position: | chr15:23696739-23697014 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 190-472 |
| Cow position: | chr15:22532409-22532140 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 155, 46 |
| Conread position: | 190-472 |
| Cow position: | chr15:35425642-35425904 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 190-475 |
| Cow position: | chr15:25208591-25208874 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 190-476 |
| Cow position: | chr15:16112571-16112277 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 193-474 |
| Cow position: | chr15:41056036-41056326 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 101, 45 |
| Conread position: | 198-456 |
| Cow position: | chr15:24994350-24994608 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 173, 27 |
| Conread position: | 198-456 |
| Cow position: | chr15:25907081-25906821 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 154 |
| Conread position: | 203-402 |
| Cow position: | chr15:26718762-26718966 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 203-480 |
| Cow position: | chr15:30470811-30471099 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 204-455 |
| Cow position: | chr15:8354201-8353945 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 204-477 |
| Cow position: | chr15:4694903-4694630 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 88 |
| Conread position: | 205-437 |
| Cow position: | chr15:13395707-13395470 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 214-402 |
| Cow position: | chr15:34751233-34751043 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 223-472 |
| Cow position: | chr15:46563347-46563589 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 229-470 |
| Cow position: | chr15:47843960-47844198 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 61 |
| Conread position: | 231-455 |
| Cow position: | chr15:244912-244686 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 71, 59 |
| Conread position: | 233-469 |
| Cow position: | chr15:53716563-53716325 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 137, 227 |
| Conread position: | 273-460 |
| Cow position: | chr15:36422701-36422515 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 302-480 |
| Cow position: | chr15:33693309-33693492 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 65 |
Show alignments to all cow chromosomes.