Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 170-480 |
| Cow position: | chr16:30036132-30036447 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 172-343 |
| Cow position: | chr16:17903752-17903574 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 139 |
| Conread position: | 172-397 |
| Cow position: | chr16:40562128-40562360 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 172-413 |
| Cow position: | chr16:11806573-11806813 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 13 |
| Conread position: | 172-456 |
| Cow position: | chr16:48095864-48095582 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 172-465 |
| Cow position: | chr16:7418281-7418568 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 172-470 |
| Cow position: | chr16:9904988-9905296 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 172-472 |
| Cow position: | chr16:40514583-40514291 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 172-472 |
| Cow position: | chr16:45121936-45122244 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 172-478 |
| Cow position: | chr16:33198537-33198225 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 173-470 |
| Cow position: | chr16:16597459-16597759 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 175-472 |
| Cow position: | chr16:48398353-48398055 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 177-398 |
| Cow position: | chr16:5363800-5364031 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 180-473 |
| Cow position: | chr16:42078935-42078644 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 181-449 |
| Cow position: | chr16:47820475-47820754 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 109 |
| Conread position: | 181-471 |
| Cow position: | chr16:45677885-45678183 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 182-480 |
| Cow position: | chr16:52834980-52834690 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 184-425 |
| Cow position: | chr16:25386886-25387130 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 184-470 |
| Cow position: | chr16:52169968-52170253 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 189-455 |
| Cow position: | chr16:54579082-54579351 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 103 |
| Conread position: | 189-471 |
| Cow position: | chr16:46433413-46433123 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 189-480 |
| Cow position: | chr16:49126272-49125980 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 190-343 |
| Cow position: | chr16:36203707-36203547 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 190-390 |
| Cow position: | chr16:20069749-20069954 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 116 |
| Conread position: | 190-397 |
| Cow position: | chr16:17945437-17945652 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 190-431 |
| Cow position: | chr16:33226621-33226376 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 190-440 |
| Cow position: | chr16:41578143-41578397 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 190-449 |
| Cow position: | chr16:45139589-45139844 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 99, 112 |
| Conread position: | 190-452 |
| Cow position: | chr16:16570832-16571083 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 190-456 |
| Cow position: | chr16:424896-424622 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 190-456 |
| Cow position: | chr16:33704724-33704989 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 190-456 |
| Cow position: | chr16:38708913-38708649 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 42 |
| Conread position: | 190-469 |
| Cow position: | chr16:34754043-34753754 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 190-470 |
| Cow position: | chr16:31079173-31078903 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 190-470 |
| Cow position: | chr16:40333409-40333135 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 190-470 |
| Cow position: | chr16:45554360-45554634 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 48 |
| Conread position: | 190-472 |
| Cow position: | chr16:4857184-4856897 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 190-472 |
| Cow position: | chr16:12320139-12320427 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 190-473 |
| Cow position: | chr16:7665554-7665843 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 190-473 |
| Cow position: | chr16:24855459-24855737 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 190-473 |
| Cow position: | chr16:26649712-26649431 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 190-475 |
| Cow position: | chr16:25170311-25170599 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 99, 112 |
| Conread position: | 190-477 |
| Cow position: | chr16:27701335-27701053 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 190-478 |
| Cow position: | chr16:17135142-17134853 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 190-480 |
| Cow position: | chr16:4852199-4851904 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 58 |
| Conread position: | 190-480 |
| Cow position: | chr16:8737982-8738282 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 190-480 |
| Cow position: | chr16:10592352-10592660 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 190-480 |
| Cow position: | chr16:56231744-56232024 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 198-410 |
| Cow position: | chr16:40700803-40700595 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 49 |
| Conread position: | 198-471 |
| Cow position: | chr16:52275205-52274934 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 198-480 |
| Cow position: | chr16:39474220-39473945 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 25 |
| Conread position: | 203-398 |
| Cow position: | chr16:29527754-29527956 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 203-398 |
| Cow position: | chr16:48340766-48340563 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 203-437 |
| Cow position: | chr16:9552991-9553222 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 177, 44 |
| Conread position: | 203-478 |
| Cow position: | chr16:25839549-25839820 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 203-480 |
| Cow position: | chr16:31149320-31149585 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 167, 33 |
| Conread position: | 204-447 |
| Cow position: | chr16:820180-820429 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 158 |
| Conread position: | 204-456 |
| Cow position: | chr16:42977394-42977661 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 204-470 |
| Cow position: | chr16:13306936-13306670 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 90, 39 |
| Conread position: | 206-452 |
| Cow position: | chr16:31561685-31561937 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 206-455 |
| Cow position: | chr16:11135049-11134799 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 100 |
| Conread position: | 206-455 |
| Cow position: | chr16:20824417-20824663 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 207-473 |
| Cow position: | chr16:45294477-45294748 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 209-456 |
| Cow position: | chr16:33645949-33646202 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 209-472 |
| Cow position: | chr16:19052575-19052835 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 209-480 |
| Cow position: | chr16:30305878-30305609 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 210-480 |
| Cow position: | chr16:11584460-11584196 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 157, 31 |
| Conread position: | 211-472 |
| Cow position: | chr16:31880824-31880550 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 212-452 |
| Cow position: | chr16:19643824-19644069 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 10, 198 |
| Conread position: | 217-457 |
| Cow position: | chr16:42444102-42444348 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 231-480 |
| Cow position: | chr16:22739217-22738970 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 8, 115 |
| Conread position: | 243-455 |
| Cow position: | chr16:32893599-32893805 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 243-456 |
| Cow position: | chr16:15945285-15945065 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 243-471 |
| Cow position: | chr16:1582955-1582728 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 261-455 |
| Cow position: | chr16:31484673-31484480 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 85 |
Show alignments to all cow chromosomes.