Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 171-480 |
| Cow position: | chr17:33155215-33154909 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 172-410 |
| Cow position: | chr17:29157355-29157598 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 123 |
| Conread position: | 172-448 |
| Cow position: | chr17:31037442-31037157 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 172-469 |
| Cow position: | chr17:11664650-11664337 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 172-477 |
| Cow position: | chr17:21973195-21972876 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 226 |
| Conread position: | 174-480 |
| Cow position: | chr17:33067616-33067317 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 175-456 |
| Cow position: | chr17:32138480-32138189 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 177-456 |
| Cow position: | chr17:25514178-25513891 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 88 |
| Conread position: | 177-473 |
| Cow position: | chr17:24883622-24883326 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 177-480 |
| Cow position: | chr17:21003883-21003582 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 59, 127 |
| Conread position: | 181-471 |
| Cow position: | chr17:3467710-3467991 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 181-472 |
| Cow position: | chr17:32989425-32989715 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 78 |
| Conread position: | 181-472 |
| Cow position: | chr17:32993675-32993385 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 182-456 |
| Cow position: | chr17:32471835-32471561 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 9, 124 |
| Conread position: | 184-452 |
| Cow position: | chr17:21115004-21114732 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 184-456 |
| Cow position: | chr17:24004324-24004600 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 105, 118 |
| Conread position: | 185-472 |
| Cow position: | chr17:20157558-20157850 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 186-424 |
| Cow position: | chr17:18495567-18495324 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 186-455 |
| Cow position: | chr17:5372576-5372306 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 5, 76 |
| Conread position: | 186-456 |
| Cow position: | chr17:1040699-1040955 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 187-368 |
| Cow position: | chr17:12591123-12591310 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 189-452 |
| Cow position: | chr17:24787066-24786802 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 146 |
| Conread position: | 189-470 |
| Cow position: | chr17:21039521-21039796 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 178, 14 |
| Conread position: | 189-473 |
| Cow position: | chr17:24973909-24974186 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 189-475 |
| Cow position: | chr17:18934214-18934501 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 104 |
| Conread position: | 190-396 |
| Cow position: | chr17:11368893-11368689 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 190-406 |
| Cow position: | chr17:23516984-23516769 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 190-429 |
| Cow position: | chr17:18109127-18108886 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 190-437 |
| Cow position: | chr17:24750875-24751125 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 190-449 |
| Cow position: | chr17:40638908-40639167 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 190-452 |
| Cow position: | chr17:22051634-22051368 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 190-455 |
| Cow position: | chr17:4299971-4299716 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 190-456 |
| Cow position: | chr17:36331000-36330740 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 190-470 |
| Cow position: | chr17:6423719-6423994 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 62, 103 |
| Conread position: | 190-470 |
| Cow position: | chr17:13922437-13922722 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 170 |
| Conread position: | 190-471 |
| Cow position: | chr17:908701-908980 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 190-472 |
| Cow position: | chr17:11215933-11215651 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 190-473 |
| Cow position: | chr17:15664629-15664919 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 105 |
| Conread position: | 190-474 |
| Cow position: | chr17:20022558-20022270 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 116 |
| Conread position: | 190-477 |
| Cow position: | chr17:25128390-25128103 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 190-478 |
| Cow position: | chr17:24587580-24587872 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 215 |
| Conread position: | 190-480 |
| Cow position: | chr17:6318909-6318617 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 190-480 |
| Cow position: | chr17:34791108-34790815 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 190-480 |
| Cow position: | chr17:39606388-39606674 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 191-459 |
| Cow position: | chr17:25901156-25901437 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 44, 279 |
| Conread position: | 191-479 |
| Cow position: | chr17:12536509-12536222 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 102 |
| Conread position: | 193-476 |
| Cow position: | chr17:33288698-33288411 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 196-397 |
| Cow position: | chr17:1410275-1410068 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 95 |
| Conread position: | 196-473 |
| Cow position: | chr17:24824206-24824489 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 98, 94 |
| Conread position: | 197-472 |
| Cow position: | chr17:33164851-33164573 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 198-480 |
| Cow position: | chr17:9824635-9824916 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 63 |
| Conread position: | 198-480 |
| Cow position: | chr17:25800916-25800634 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 91, 148 |
| Conread position: | 200-456 |
| Cow position: | chr17:17044365-17044108 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 203-410 |
| Cow position: | chr17:4225524-4225321 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 203-470 |
| Cow position: | chr17:32333121-32332852 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 204-462 |
| Cow position: | chr17:28285059-28284802 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 204-478 |
| Cow position: | chr17:25511214-25511493 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 205-473 |
| Cow position: | chr17:29995465-29995192 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 207-470 |
| Cow position: | chr17:25612064-25612327 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 209-452 |
| Cow position: | chr17:12959082-12959325 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 209-456 |
| Cow position: | chr17:5423095-5422851 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 209-456 |
| Cow position: | chr17:11912530-11912278 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 209-476 |
| Cow position: | chr17:26575254-26574977 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 209-480 |
| Cow position: | chr17:26818482-26818221 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 210-452 |
| Cow position: | chr17:1634517-1634270 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 210-456 |
| Cow position: | chr17:12325785-12325543 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 210-471 |
| Cow position: | chr17:17059402-17059659 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 210-479 |
| Cow position: | chr17:30728485-30728756 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 160, 39 |
| Conread position: | 211-448 |
| Cow position: | chr17:45296394-45296625 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 142, 79 |
| Conread position: | 211-470 |
| Cow position: | chr17:32419135-32418877 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 212-456 |
| Cow position: | chr17:3577516-3577754 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 93 |
| Conread position: | 212-478 |
| Cow position: | chr17:25473300-25473032 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 92 |
| Conread position: | 215-449 |
| Cow position: | chr17:9932319-9932091 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 216-480 |
| Cow position: | chr17:3388808-3389084 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 220-480 |
| Cow position: | chr17:37341053-37340781 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 192 |
| Conread position: | 234-437 |
| Cow position: | chr17:40276742-40276949 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 79 |
| Conread position: | 237-472 |
| Cow position: | chr17:43315281-43315048 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 133, 54 |
| Conread position: | 237-480 |
| Cow position: | chr17:42150396-42150637 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 53 |
| Conread position: | 242-476 |
| Cow position: | chr17:7810745-7810499 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 103 |
| Conread position: | 244-452 |
| Cow position: | chr17:17034961-17035169 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 302-456 |
| Cow position: | chr17:39963947-39964105 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 64 |
Show alignments to all cow chromosomes.