Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 169-431 |
| Cow position: | chr18:34834354-34834624 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 172-437 |
| Cow position: | chr18:47511870-47512133 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 172-472 |
| Cow position: | chr18:33896563-33896241 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 223 |
| Conread position: | 172-475 |
| Cow position: | chr18:10891380-10891683 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 172-479 |
| Cow position: | chr18:56181597-56181285 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 173-452 |
| Cow position: | chr18:42479722-42479431 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 174 |
| Conread position: | 173-455 |
| Cow position: | chr18:18592341-18592616 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 173-471 |
| Cow position: | chr18:12242142-12242444 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 119 |
| Conread position: | 177-476 |
| Cow position: | chr18:1571365-1571067 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 179-480 |
| Cow position: | chr18:49038333-49038629 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 180-475 |
| Cow position: | chr18:10904722-10905018 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 180-480 |
| Cow position: | chr18:31711693-31711401 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 180-480 |
| Cow position: | chr18:51594929-51594638 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 182-468 |
| Cow position: | chr18:35535274-35534986 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 182-471 |
| Cow position: | chr18:50959361-50959656 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 208 |
| Conread position: | 184-440 |
| Cow position: | chr18:55000865-55000600 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 152 |
| Conread position: | 184-455 |
| Cow position: | chr18:10575981-10576255 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 191 |
| Conread position: | 184-470 |
| Cow position: | chr18:17391104-17390824 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 186, 55 |
| Conread position: | 184-472 |
| Cow position: | chr18:23630727-23630444 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 185-472 |
| Cow position: | chr18:9974442-9974162 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 109, 12 |
| Conread position: | 186-431 |
| Cow position: | chr18:35367306-35367074 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 187-459 |
| Cow position: | chr18:5766295-5766564 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 187-478 |
| Cow position: | chr18:1954707-1954405 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 189-476 |
| Cow position: | chr18:8171202-8170918 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 115 |
| Conread position: | 189-480 |
| Cow position: | chr18:26938863-26939149 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 172 |
| Conread position: | 190-343 |
| Cow position: | chr18:5487133-5487279 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 105, 46 |
| Conread position: | 190-455 |
| Cow position: | chr18:42432209-42431940 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 53, 212 |
| Conread position: | 190-455 |
| Cow position: | chr18:55505292-55505555 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 190-456 |
| Cow position: | chr18:25006604-25006353 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 43 |
| Conread position: | 190-456 |
| Cow position: | chr18:33299786-33300038 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 190-456 |
| Cow position: | chr18:44262511-44262776 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 104 |
| Conread position: | 190-456 |
| Cow position: | chr18:48713434-48713695 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 60, 101 |
| Conread position: | 190-471 |
| Cow position: | chr18:2146701-2146425 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 190-472 |
| Cow position: | chr18:7109013-7109299 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 190-472 |
| Cow position: | chr18:10977328-10977042 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 190-472 |
| Cow position: | chr18:11691523-11691238 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 190-478 |
| Cow position: | chr18:29356742-29356459 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 190-480 |
| Cow position: | chr18:20641604-20641325 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 41 |
| Conread position: | 190-480 |
| Cow position: | chr18:55119754-55120043 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 191-450 |
| Cow position: | chr18:28658023-28657768 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 191-456 |
| Cow position: | chr18:9365802-9366075 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 53, 208 |
| Conread position: | 195-456 |
| Cow position: | chr18:11790811-11791071 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 198-365 |
| Cow position: | chr18:11684873-11685041 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 202-455 |
| Cow position: | chr18:5578203-5578447 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 104 |
| Conread position: | 202-456 |
| Cow position: | chr18:43797057-43796806 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 203-448 |
| Cow position: | chr18:28930742-28930496 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 203-456 |
| Cow position: | chr18:25598344-25598080 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 203-473 |
| Cow position: | chr18:22180887-22180612 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 188 |
| Conread position: | 209-445 |
| Cow position: | chr18:8949890-8949655 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 209-452 |
| Cow position: | chr18:15613952-15613715 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 209-455 |
| Cow position: | chr18:9040807-9040552 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 209-478 |
| Cow position: | chr18:22569164-22568895 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 218 |
| Conread position: | 210-472 |
| Cow position: | chr18:11779558-11779821 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 160, 36 |
| Conread position: | 213-471 |
| Cow position: | chr18:4884612-4884352 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 215-469 |
| Cow position: | chr18:45903986-45903730 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 232-471 |
| Cow position: | chr18:50359258-50359492 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 238-448 |
| Cow position: | chr18:38601953-38601740 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 238-456 |
| Cow position: | chr18:31082418-31082190 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 258-470 |
| Cow position: | chr18:50632490-50632279 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 140 |
Show alignments to all cow chromosomes.