Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 167-400 |
| Cow position: | chr19:35742042-35742276 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 172-368 |
| Cow position: | chr19:20310744-20310555 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 82, 61 |
| Conread position: | 172-456 |
| Cow position: | chr19:33903536-33903251 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 172-456 |
| Cow position: | chr19:42517371-42517079 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 172-470 |
| Cow position: | chr19:47671636-47671922 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 172-480 |
| Cow position: | chr19:15852834-15853125 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 198, 13 |
| Conread position: | 172-480 |
| Cow position: | chr19:23378573-23378874 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 174-456 |
| Cow position: | chr19:23784526-23784251 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 128 |
| Conread position: | 175-393 |
| Cow position: | chr19:18786432-18786209 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 116 |
| Conread position: | 176-420 |
| Cow position: | chr19:16105192-16104944 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 132 |
| Conread position: | 177-437 |
| Cow position: | chr19:10545813-10545550 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 177-473 |
| Cow position: | chr19:29625799-29626094 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 180-433 |
| Cow position: | chr19:23832701-23832436 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 180-449 |
| Cow position: | chr19:23394680-23394953 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 181-480 |
| Cow position: | chr19:16096659-16096354 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 125 |
| Conread position: | 185-473 |
| Cow position: | chr19:18054344-18054070 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 195, 49 |
| Conread position: | 186-343 |
| Cow position: | chr19:11212502-11212339 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 186-472 |
| Cow position: | chr19:22043450-22043166 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 186-472 |
| Cow position: | chr19:24005568-24005846 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 187-456 |
| Cow position: | chr19:39576666-39576399 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 189-470 |
| Cow position: | chr19:43413685-43413967 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 190-344 |
| Cow position: | chr19:13757155-13757312 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 190-449 |
| Cow position: | chr19:14632129-14631873 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 47 |
| Conread position: | 190-449 |
| Cow position: | chr19:24062192-24062442 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 189, 25 |
| Conread position: | 190-449 |
| Cow position: | chr19:34287926-34288181 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 190-449 |
| Cow position: | chr19:39057150-39057416 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 99, 39 |
| Conread position: | 190-452 |
| Cow position: | chr19:47453336-47453602 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 190-452 |
| Cow position: | chr19:48960302-48960564 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 190-455 |
| Cow position: | chr19:10929347-10929620 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 190-456 |
| Cow position: | chr19:44839012-44838765 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 190-468 |
| Cow position: | chr19:10213576-10213854 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 106 |
| Conread position: | 190-469 |
| Cow position: | chr19:7668605-7668882 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 100 |
| Conread position: | 190-469 |
| Cow position: | chr19:19549642-19549368 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 115 |
| Conread position: | 190-469 |
| Cow position: | chr19:21199043-21199338 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 190-470 |
| Cow position: | chr19:3621337-3621617 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 190-470 |
| Cow position: | chr19:24759978-24759699 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 102 |
| Conread position: | 190-472 |
| Cow position: | chr19:5185338-5185067 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 180, 55 |
| Conread position: | 190-473 |
| Cow position: | chr19:29368307-29368589 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 190-475 |
| Cow position: | chr19:40127260-40126968 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 195-448 |
| Cow position: | chr19:7148154-7147889 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 111 |
| Conread position: | 198-472 |
| Cow position: | chr19:33575437-33575709 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 198-472 |
| Cow position: | chr19:52158449-52158732 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 142 |
| Conread position: | 198-476 |
| Cow position: | chr19:15719704-15719430 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 198-480 |
| Cow position: | chr19:12052933-12052649 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 198-480 |
| Cow position: | chr19:12067658-12067942 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 198-480 |
| Cow position: | chr19:46454760-46455039 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 201-456 |
| Cow position: | chr19:13488588-13488331 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 203-395 |
| Cow position: | chr19:9541974-9541786 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 203-478 |
| Cow position: | chr19:11646491-11646760 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 203-478 |
| Cow position: | chr19:34420332-34420605 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 204-456 |
| Cow position: | chr19:23889561-23889311 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 209-437 |
| Cow position: | chr19:28447365-28447595 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 209-472 |
| Cow position: | chr19:37467134-37466866 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 209-472 |
| Cow position: | chr19:42768174-42767913 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 209-480 |
| Cow position: | chr19:11560118-11559837 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 199 |
| Conread position: | 209-480 |
| Cow position: | chr19:17972335-17972069 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 210-456 |
| Cow position: | chr19:21378545-21378291 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 211-455 |
| Cow position: | chr19:33913451-33913704 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 212-472 |
| Cow position: | chr19:10238664-10238926 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 213-472 |
| Cow position: | chr19:6343997-6344273 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 97 |
| Conread position: | 215-456 |
| Cow position: | chr19:34758068-34757817 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 20 |
| Conread position: | 217-476 |
| Cow position: | chr19:33987997-33988266 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 228-479 |
| Cow position: | chr19:23087928-23088181 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 62 |
| Conread position: | 232-472 |
| Cow position: | chr19:28810369-28810126 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 236-452 |
| Cow position: | chr19:10538598-10538387 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 239-472 |
| Cow position: | chr19:23756787-23756556 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 243-479 |
| Cow position: | chr19:49221662-49221422 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 127, 147 |
| Conread position: | 244-471 |
| Cow position: | chr19:38732099-38732327 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 108, 101 |
| Conread position: | 300-472 |
| Cow position: | chr19:2793642-2793468 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.