Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 3-187 |
| Cow position: | chr20:4554562-4554747 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 86 |
| Conread position: | 172-456 |
| Cow position: | chr20:14806826-14807112 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 172-456 |
| Cow position: | chr20:28441270-28441548 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 172-473 |
| Cow position: | chr20:8547006-8547306 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 173-429 |
| Cow position: | chr20:17100302-17100561 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 175-473 |
| Cow position: | chr20:3254990-3255280 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 190, 14 |
| Conread position: | 176-471 |
| Cow position: | chr20:29844993-29845298 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 177-433 |
| Cow position: | chr20:20203163-20203420 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 181-455 |
| Cow position: | chr20:13269572-13269842 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 181-480 |
| Cow position: | chr20:398354-398061 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 186-429 |
| Cow position: | chr20:32463566-32463323 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 186-472 |
| Cow position: | chr20:26996489-26996778 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 187-343 |
| Cow position: | chr20:30887988-30888148 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 187-343 |
| Cow position: | chr20:39267001-39266845 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 187-472 |
| Cow position: | chr20:22265287-22265020 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 272, 7 |
| Conread position: | 189-448 |
| Cow position: | chr20:21428119-21428379 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 189-461 |
| Cow position: | chr20:7426235-7425963 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 40 |
| Conread position: | 189-472 |
| Cow position: | chr20:18379335-18379621 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 146 |
| Conread position: | 190-357 |
| Cow position: | chr20:3607002-3606834 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 190-398 |
| Cow position: | chr20:38768496-38768293 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 116, 48 |
| Conread position: | 190-442 |
| Cow position: | chr20:15548940-15548674 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 190-447 |
| Cow position: | chr20:8578208-8578471 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 190-447 |
| Cow position: | chr20:23792570-23792814 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 190-456 |
| Cow position: | chr20:39398446-39398711 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 152, 57 |
| Conread position: | 190-470 |
| Cow position: | chr20:38514742-38515031 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 190-472 |
| Cow position: | chr20:28982659-28982944 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 115 |
| Conread position: | 190-478 |
| Cow position: | chr20:8307979-8308254 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 190-479 |
| Cow position: | chr20:12420659-12420366 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 190-480 |
| Cow position: | chr20:12239728-12239439 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 122 |
| Conread position: | 190-480 |
| Cow position: | chr20:23846709-23846415 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 190-480 |
| Cow position: | chr20:31740261-31739965 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 198-452 |
| Cow position: | chr20:38089880-38090141 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 198-471 |
| Cow position: | chr20:7738258-7737991 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 154, 33 |
| Conread position: | 203-456 |
| Cow position: | chr20:12581983-12581727 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 203-471 |
| Cow position: | chr20:22065042-22065304 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 87 |
| Conread position: | 203-473 |
| Cow position: | chr20:8702944-8702685 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 206-478 |
| Cow position: | chr20:12126328-12126051 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 209-479 |
| Cow position: | chr20:7624269-7624007 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 93, 80 |
| Conread position: | 209-480 |
| Cow position: | chr20:14620330-14620054 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 210-456 |
| Cow position: | chr20:28605189-28605435 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 212-456 |
| Cow position: | chr20:5702704-5702951 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 221-471 |
| Cow position: | chr20:32847333-32847586 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 229-456 |
| Cow position: | chr20:2298788-2298566 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 236-469 |
| Cow position: | chr20:20158142-20158372 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 58 |
| Conread position: | 238-470 |
| Cow position: | chr20:2819553-2819790 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 127, 26 |
| Conread position: | 243-456 |
| Cow position: | chr20:25009618-25009404 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 24 |
Show alignments to all cow chromosomes.