Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 171-343 |
| Cow position: | chr21:44515224-44515398 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 172-403 |
| Cow position: | chr21:29484940-29485176 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 172-447 |
| Cow position: | chr21:31691443-31691713 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 172-455 |
| Cow position: | chr21:22860960-22861241 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 172-470 |
| Cow position: | chr21:34654037-34654333 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 172-472 |
| Cow position: | chr21:641547-641849 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 205 |
| Conread position: | 173-452 |
| Cow position: | chr21:29214193-29213912 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 174-340 |
| Cow position: | chr21:47160182-47160349 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 47 |
| Conread position: | 174-449 |
| Cow position: | chr21:24858278-24858559 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 78, 118 |
| Conread position: | 175-456 |
| Cow position: | chr21:11740158-11739869 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 6, 134 |
| Conread position: | 181-470 |
| Cow position: | chr21:37299430-37299723 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 186-413 |
| Cow position: | chr21:297729-297948 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 55, 50 |
| Conread position: | 186-471 |
| Cow position: | chr21:30222320-30222606 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 187-449 |
| Cow position: | chr21:42135641-42135376 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 189-435 |
| Cow position: | chr21:724906-724664 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 190-396 |
| Cow position: | chr21:36297471-36297685 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 190-422 |
| Cow position: | chr21:9990491-9990727 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 190-455 |
| Cow position: | chr21:47465140-47464870 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 190-456 |
| Cow position: | chr21:868944-868669 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 190-456 |
| Cow position: | chr21:10657121-10656851 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 190-469 |
| Cow position: | chr21:11644989-11644704 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 56, 104 |
| Conread position: | 190-470 |
| Cow position: | chr21:17890284-17890566 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 190-471 |
| Cow position: | chr21:44214105-44214375 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 190-477 |
| Cow position: | chr21:29069348-29069052 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 190-480 |
| Cow position: | chr21:28030269-28030551 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 198-471 |
| Cow position: | chr21:28919535-28919267 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 203-368 |
| Cow position: | chr21:20183065-20183230 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 85 |
| Conread position: | 203-449 |
| Cow position: | chr21:829218-828967 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 103 |
| Conread position: | 203-469 |
| Cow position: | chr21:22014181-22014454 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 206-456 |
| Cow position: | chr21:19240880-19240628 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 209-440 |
| Cow position: | chr21:643324-643557 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 209-470 |
| Cow position: | chr21:742285-742537 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 209-478 |
| Cow position: | chr21:32559361-32559100 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 176, 21 |
| Conread position: | 209-480 |
| Cow position: | chr21:71585-71857 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 210-470 |
| Cow position: | chr21:8426447-8426706 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 212-455 |
| Cow position: | chr21:12104367-12104602 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 134 |
| Conread position: | 234-469 |
| Cow position: | chr21:20163734-20163971 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 234-472 |
| Cow position: | chr21:17252954-17252712 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 57 |
| Conread position: | 238-473 |
| Cow position: | chr21:22850951-22851181 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 243-471 |
| Cow position: | chr21:6851206-6851429 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 47 |
| Conread position: | 245-480 |
| Cow position: | chr21:39393784-39394022 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 114, 157 |
| Conread position: | 248-457 |
| Cow position: | chr21:24875391-24875603 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 261-478 |
| Cow position: | chr21:40820801-40820579 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 48 |
Show alignments to all cow chromosomes.