Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 155-449 |
| Cow position: | chr23:17486949-17486645 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 159 |
| Conread position: | 163-452 |
| Cow position: | chr23:21452841-21452547 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 171-480 |
| Cow position: | chr23:14523883-14524209 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 172-398 |
| Cow position: | chr23:21502738-21502499 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 172-476 |
| Cow position: | chr23:40778166-40778471 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 172-480 |
| Cow position: | chr23:12363719-12363407 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 176-452 |
| Cow position: | chr23:18286099-18286368 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 182-480 |
| Cow position: | chr23:4646422-4646720 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 120 |
| Conread position: | 184-403 |
| Cow position: | chr23:3282208-3281986 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 186-470 |
| Cow position: | chr23:1438210-1438480 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 187-471 |
| Cow position: | chr23:24509619-24509887 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 107, 11 |
| Conread position: | 187-473 |
| Cow position: | chr23:307368-307663 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 106 |
| Conread position: | 189-452 |
| Cow position: | chr23:9599408-9599673 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 189-471 |
| Cow position: | chr23:15287217-15286948 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 190-456 |
| Cow position: | chr23:1883313-1883582 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 190-456 |
| Cow position: | chr23:4968601-4968342 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 190-471 |
| Cow position: | chr23:3293611-3293892 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 181 |
| Conread position: | 190-471 |
| Cow position: | chr23:5451244-5451526 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 190-471 |
| Cow position: | chr23:5732469-5732739 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 190-472 |
| Cow position: | chr23:16881243-16880966 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 102, 114 |
| Conread position: | 190-473 |
| Cow position: | chr23:3244996-3244710 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 190-480 |
| Cow position: | chr23:2282255-2281977 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 180, 49 |
| Conread position: | 190-480 |
| Cow position: | chr23:19872755-19872487 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 162, 58 |
| Conread position: | 191-456 |
| Cow position: | chr23:5795398-5795665 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 191-480 |
| Cow position: | chr23:3967638-3967338 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 110, 42 |
| Conread position: | 197-471 |
| Cow position: | chr23:5426357-5426640 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 198-452 |
| Cow position: | chr23:40391404-40391660 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 198-453 |
| Cow position: | chr23:5881591-5881335 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 107 |
| Conread position: | 198-470 |
| Cow position: | chr23:24685179-24685442 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 203-397 |
| Cow position: | chr23:349018-348818 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 203-417 |
| Cow position: | chr23:21764850-21765066 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 203-467 |
| Cow position: | chr23:22586821-22587078 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 179, 32 |
| Conread position: | 203-469 |
| Cow position: | chr23:35965075-35965352 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 203-470 |
| Cow position: | chr23:16961228-16961488 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 159 |
| Conread position: | 205-470 |
| Cow position: | chr23:39778333-39778600 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 205-475 |
| Cow position: | chr23:1290228-1290513 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 206-473 |
| Cow position: | chr23:24966529-24966255 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 206-480 |
| Cow position: | chr23:40995107-40995375 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 85 |
| Conread position: | 209-456 |
| Cow position: | chr23:13202423-13202182 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 85 |
| Conread position: | 209-480 |
| Cow position: | chr23:20539321-20539593 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 210-470 |
| Cow position: | chr23:2501915-2501655 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 40, 168 |
| Conread position: | 211-407 |
| Cow position: | chr23:35369105-35368906 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 79 |
| Conread position: | 212-470 |
| Cow position: | chr23:18749124-18748874 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 95 |
| Conread position: | 221-452 |
| Cow position: | chr23:2160685-2160457 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 228-472 |
| Cow position: | chr23:20093286-20093038 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 231-478 |
| Cow position: | chr23:25990476-25990227 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 240-480 |
| Cow position: | chr23:8698391-8698637 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 130, 12 |
| Conread position: | 266-480 |
| Cow position: | chr23:27848992-27849205 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 38 |
Show alignments to all cow chromosomes.