Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-452 |
| Cow position: | chr24:28496710-28496424 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 174-400 |
| Cow position: | chr24:39791414-39791647 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 176-448 |
| Cow position: | chr24:31036228-31036493 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 177-479 |
| Cow position: | chr24:17104692-17104386 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 181-447 |
| Cow position: | chr24:17860377-17860109 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 181-456 |
| Cow position: | chr24:25122237-25122499 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 110, 54 |
| Conread position: | 181-472 |
| Cow position: | chr24:1269676-1269959 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 187-456 |
| Cow position: | chr24:37650561-37650837 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 225 |
| Conread position: | 189-455 |
| Cow position: | chr24:15057293-15057545 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 189-470 |
| Cow position: | chr24:5141836-5142113 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 190-389 |
| Cow position: | chr24:3430626-3430821 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 190-421 |
| Cow position: | chr24:23187028-23186800 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 54, 177 |
| Conread position: | 190-431 |
| Cow position: | chr24:32054553-32054790 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 190-437 |
| Cow position: | chr24:18357161-18356910 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 190-456 |
| Cow position: | chr24:28233942-28234203 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 190-456 |
| Cow position: | chr24:29561681-29561417 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 190-456 |
| Cow position: | chr24:30235760-30236034 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 190-456 |
| Cow position: | chr24:37037790-37038053 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 117 |
| Conread position: | 190-470 |
| Cow position: | chr24:33372451-33372721 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 190-472 |
| Cow position: | chr24:2402475-2402200 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 99, 104 |
| Conread position: | 190-479 |
| Cow position: | chr24:211878-212154 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 190-479 |
| Cow position: | chr24:30314136-30313845 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 191-478 |
| Cow position: | chr24:36404250-36403973 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 195-461 |
| Cow position: | chr24:31816474-31816742 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 195-472 |
| Cow position: | chr24:40301056-40301337 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 198-480 |
| Cow position: | chr24:230177-230465 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 215 |
| Conread position: | 200-478 |
| Cow position: | chr24:18755659-18755942 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 203-455 |
| Cow position: | chr24:28042878-28043155 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 203-471 |
| Cow position: | chr24:13948027-13948298 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 203-477 |
| Cow position: | chr24:37823434-37823707 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 176, 50 |
| Conread position: | 204-472 |
| Cow position: | chr24:20364503-20364239 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 205-456 |
| Cow position: | chr24:27713499-27713248 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 101 |
| Conread position: | 205-469 |
| Cow position: | chr24:27608193-27607937 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 206-471 |
| Cow position: | chr24:18999957-19000219 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 208-472 |
| Cow position: | chr24:27284731-27285001 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 209-452 |
| Cow position: | chr24:15288732-15288985 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 209-480 |
| Cow position: | chr24:22689669-22689388 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 210-437 |
| Cow position: | chr24:17311306-17311081 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 210-457 |
| Cow position: | chr24:24491105-24490862 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 210-470 |
| Cow position: | chr24:28303454-28303187 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 210-471 |
| Cow position: | chr24:37975070-37974807 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 212-456 |
| Cow position: | chr24:2992963-2992718 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 150, 37 |
| Conread position: | 214-473 |
| Cow position: | chr24:27844613-27844355 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 215-472 |
| Cow position: | chr24:18442643-18442393 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 97 |
| Conread position: | 218-473 |
| Cow position: | chr24:18474808-18474551 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 235-456 |
| Cow position: | chr24:5360657-5360873 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 147, 55 |
| Conread position: | 244-470 |
| Cow position: | chr24:22133118-22133341 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 60 |
Show alignments to all cow chromosomes.