Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 171-456 |
| Cow position: | chr25:22178815-22179094 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 172-456 |
| Cow position: | chr25:19364165-19363876 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 172-456 |
| Cow position: | chr25:20023494-20023210 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 138 |
| Conread position: | 172-471 |
| Cow position: | chr25:15410019-15409724 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 172-472 |
| Cow position: | chr25:12510114-12509822 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 130, 118 |
| Conread position: | 172-480 |
| Cow position: | chr25:22756505-22756817 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 173-467 |
| Cow position: | chr25:6683166-6682856 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 301 |
| Conread position: | 175-469 |
| Cow position: | chr25:4521937-4521644 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 176-398 |
| Cow position: | chr25:22531182-22531408 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 126 |
| Conread position: | 177-455 |
| Cow position: | chr25:36872264-36872546 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 55 |
| Conread position: | 184-431 |
| Cow position: | chr25:15714782-15715031 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 186-452 |
| Cow position: | chr25:23829218-23828950 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 186-456 |
| Cow position: | chr25:11433043-11432768 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 5, 127 |
| Conread position: | 186-472 |
| Cow position: | chr25:33550418-33550710 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 187-456 |
| Cow position: | chr25:13443500-13443223 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 189-455 |
| Cow position: | chr25:7641540-7641272 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 189-456 |
| Cow position: | chr25:7673204-7673491 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 189-472 |
| Cow position: | chr25:37332131-37331846 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 190-431 |
| Cow position: | chr25:20785670-20785426 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 190-437 |
| Cow position: | chr25:7799468-7799719 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 112, 46 |
| Conread position: | 190-437 |
| Cow position: | chr25:9843091-9843348 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 190-448 |
| Cow position: | chr25:23245087-23244828 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 104, 100 |
| Conread position: | 190-452 |
| Cow position: | chr25:11051443-11051702 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 190-456 |
| Cow position: | chr25:21893251-21893518 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 190-456 |
| Cow position: | chr25:26679143-26679411 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 180, 52 |
| Conread position: | 190-459 |
| Cow position: | chr25:36081792-36082054 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 190-468 |
| Cow position: | chr25:7007824-7008115 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 280 |
| Conread position: | 190-472 |
| Cow position: | chr25:20008050-20008333 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 99, 32 |
| Conread position: | 190-472 |
| Cow position: | chr25:24572984-24573257 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 190-472 |
| Cow position: | chr25:24669521-24669253 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 190-473 |
| Cow position: | chr25:19129768-19130054 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 190-480 |
| Cow position: | chr25:7750365-7750655 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 190-480 |
| Cow position: | chr25:13621444-13621155 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 194-470 |
| Cow position: | chr25:14720665-14720929 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 198-403 |
| Cow position: | chr25:23504970-23505184 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 198-472 |
| Cow position: | chr25:21668169-21668447 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 206 |
| Conread position: | 203-398 |
| Cow position: | chr25:34169874-34170071 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 203-472 |
| Cow position: | chr25:13272495-13272768 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 88 |
| Conread position: | 203-480 |
| Cow position: | chr25:21191415-21191683 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 164 |
| Conread position: | 208-472 |
| Cow position: | chr25:1840254-1840525 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 209-452 |
| Cow position: | chr25:2624741-2624974 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 156, 33 |
| Conread position: | 209-456 |
| Cow position: | chr25:26306272-26306019 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 209-473 |
| Cow position: | chr25:18721188-18720923 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 209-480 |
| Cow position: | chr25:15273607-15273870 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 213-470 |
| Cow position: | chr25:40682676-40682934 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 168, 95 |
| Conread position: | 231-456 |
| Cow position: | chr25:4157285-4157063 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 232-456 |
| Cow position: | chr25:19679312-19679536 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 232-480 |
| Cow position: | chr25:22348507-22348249 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 233-452 |
| Cow position: | chr25:35339232-35339010 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 95, 168 |
| Conread position: | 238-456 |
| Cow position: | chr25:13826400-13826615 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 244-469 |
| Cow position: | chr25:9990141-9989906 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 251-456 |
| Cow position: | chr25:36873357-36873153 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 270-456 |
| Cow position: | chr25:1802602-1802795 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 137 |
Show alignments to all cow chromosomes.