Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-470 |
| Cow position: | chr27:8353532-8353252 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 172-480 |
| Cow position: | chr27:16780927-16780606 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 172-480 |
| Cow position: | chr27:20828651-20828956 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 173-480 |
| Cow position: | chr27:22547350-22547643 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 174-468 |
| Cow position: | chr27:12459339-12459047 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 176-477 |
| Cow position: | chr27:16786879-16786581 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 60 |
| Conread position: | 181-470 |
| Cow position: | chr27:28206848-28206556 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 185-456 |
| Cow position: | chr27:16103851-16103581 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 185-456 |
| Cow position: | chr27:27632563-27632823 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 185, 8 |
| Conread position: | 186-452 |
| Cow position: | chr27:22220600-22220324 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 190-344 |
| Cow position: | chr27:16625937-16625785 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 190-456 |
| Cow position: | chr27:16284514-16284259 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 190-456 |
| Cow position: | chr27:23452498-23452233 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 177, 53 |
| Conread position: | 190-469 |
| Cow position: | chr27:19388053-19387779 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 181, 35 |
| Conread position: | 190-480 |
| Cow position: | chr27:17397412-17397703 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 56, 103 |
| Conread position: | 190-480 |
| Cow position: | chr27:23511029-23510721 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 195-470 |
| Cow position: | chr27:19685677-19685955 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 112 |
| Conread position: | 198-470 |
| Cow position: | chr27:30890318-30890058 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 198-473 |
| Cow position: | chr27:23559999-23560276 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 203-447 |
| Cow position: | chr27:20067950-20068196 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 203-455 |
| Cow position: | chr27:23107875-23108131 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 203-456 |
| Cow position: | chr27:7412411-7412164 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 203-480 |
| Cow position: | chr27:22035349-22035626 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 204-395 |
| Cow position: | chr27:4673044-4672842 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 204-456 |
| Cow position: | chr27:15409009-15409255 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 204-470 |
| Cow position: | chr27:22171325-22171059 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 207-455 |
| Cow position: | chr27:20897001-20897249 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 209-448 |
| Cow position: | chr27:21669099-21669334 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 214, 27 |
| Conread position: | 209-470 |
| Cow position: | chr27:15454235-15453970 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 210-477 |
| Cow position: | chr27:12425308-12425033 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 214-478 |
| Cow position: | chr27:19509030-19508762 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 215-478 |
| Cow position: | chr27:4944499-4944757 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 217-478 |
| Cow position: | chr27:28478594-28478330 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 239-470 |
| Cow position: | chr27:6319910-6319679 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 243-480 |
| Cow position: | chr27:6106684-6106452 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 245-470 |
| Cow position: | chr27:7343444-7343671 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 245-470 |
| Cow position: | chr27:15002994-15003222 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 249-471 |
| Cow position: | chr27:10404136-10404361 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 101, 40 |
Show alignments to all cow chromosomes.