Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 160-480 |
| Cow position: | chr28:3445592-3445264 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 172-468 |
| Cow position: | chr28:3024009-3023714 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 76, 13 |
| Conread position: | 172-472 |
| Cow position: | chr28:4070872-4071164 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 172-472 |
| Cow position: | chr28:19564325-19564029 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 172-476 |
| Cow position: | chr28:22332438-22332742 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 175-398 |
| Cow position: | chr28:2960927-2960697 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 175-472 |
| Cow position: | chr28:7350565-7350857 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 119, 68 |
| Conread position: | 177-472 |
| Cow position: | chr28:5074600-5074315 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 67, 128 |
| Conread position: | 179-401 |
| Cow position: | chr28:12070148-12070368 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 181-452 |
| Cow position: | chr28:5684618-5684887 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 181-455 |
| Cow position: | chr28:24082176-24082460 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 67, 116 |
| Conread position: | 184-478 |
| Cow position: | chr28:33884319-33884615 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 185-480 |
| Cow position: | chr28:5437168-5436872 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 186-470 |
| Cow position: | chr28:10589105-10588829 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 187-456 |
| Cow position: | chr28:1099739-1099486 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 187-456 |
| Cow position: | chr28:4834926-4834652 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 118 |
| Conread position: | 189-456 |
| Cow position: | chr28:14997986-14998255 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 189-456 |
| Cow position: | chr28:22813182-22813439 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 189-471 |
| Cow position: | chr28:21844877-21845156 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 84 |
| Conread position: | 189-479 |
| Cow position: | chr28:7619231-7618947 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 189-480 |
| Cow position: | chr28:4158876-4159178 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 113 |
| Conread position: | 190-390 |
| Cow position: | chr28:7549137-7548936 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 101 |
| Conread position: | 190-437 |
| Cow position: | chr28:5204115-5204362 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 190-456 |
| Cow position: | chr28:3914634-3914896 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 181 |
| Conread position: | 190-456 |
| Cow position: | chr28:9285451-9285186 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 97 |
| Conread position: | 190-456 |
| Cow position: | chr28:11079229-11079491 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 98 |
| Conread position: | 190-456 |
| Cow position: | chr28:13474223-13474490 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 190-456 |
| Cow position: | chr28:22345942-22346213 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 190-456 |
| Cow position: | chr28:25128806-25129075 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 190-456 |
| Cow position: | chr28:34430499-34430232 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 154, 48 |
| Conread position: | 190-471 |
| Cow position: | chr28:8347654-8347939 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 190-472 |
| Cow position: | chr28:8787462-8787750 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 190-472 |
| Cow position: | chr28:11422893-11422613 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 190-478 |
| Cow position: | chr28:5139074-5138788 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 203 |
| Conread position: | 190-478 |
| Cow position: | chr28:21868378-21868668 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 190-478 |
| Cow position: | chr28:24966307-24966598 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 190-480 |
| Cow position: | chr28:4282567-4282275 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 168, 57 |
| Conread position: | 190-480 |
| Cow position: | chr28:20124706-20124995 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 99, 208 |
| Conread position: | 190-480 |
| Cow position: | chr28:26327884-26328173 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 192-431 |
| Cow position: | chr28:4016457-4016692 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 102, 58 |
| Conread position: | 198-470 |
| Cow position: | chr28:4090117-4089856 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 131, 40 |
| Conread position: | 198-477 |
| Cow position: | chr28:3740811-3741080 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 198-477 |
| Cow position: | chr28:11884589-11884319 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 198-480 |
| Cow position: | chr28:11426611-11426333 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 203-448 |
| Cow position: | chr28:11585269-11585026 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 203-456 |
| Cow position: | chr28:4181939-4182192 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 167, 40 |
| Conread position: | 203-472 |
| Cow position: | chr28:4013022-4013289 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 88, 35 |
| Conread position: | 203-473 |
| Cow position: | chr28:3411056-3410782 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 204-456 |
| Cow position: | chr28:25056903-25057147 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 204-478 |
| Cow position: | chr28:29416782-29416511 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 205-480 |
| Cow position: | chr28:7132138-7131878 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 206-456 |
| Cow position: | chr28:26531343-26531090 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 210-452 |
| Cow position: | chr28:16346590-16346351 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 211-470 |
| Cow position: | chr28:9636509-9636253 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 215-475 |
| Cow position: | chr28:777619-777885 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 233-456 |
| Cow position: | chr28:17739788-17740016 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 238-480 |
| Cow position: | chr28:5254845-5255085 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 132, 11 |
| Conread position: | 248-470 |
| Cow position: | chr28:29850835-29850618 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 249-475 |
| Cow position: | chr28:8304228-8304451 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 60 |
Show alignments to all cow chromosomes.