Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-437 |
| Cow position: | chr29:22162357-22162095 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 200 |
| Conread position: | 172-455 |
| Cow position: | chr29:35501755-35501481 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 57 |
| Conread position: | 172-456 |
| Cow position: | chr29:12680054-12680343 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 176-448 |
| Cow position: | chr29:29057081-29057353 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 186-456 |
| Cow position: | chr29:4480261-4479982 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 118 |
| Conread position: | 186-472 |
| Cow position: | chr29:20770255-20770545 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 107 |
| Conread position: | 186-473 |
| Cow position: | chr29:41530758-41531052 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 186-478 |
| Cow position: | chr29:4874976-4874684 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 167 |
| Conread position: | 190-343 |
| Cow position: | chr29:26615806-26615652 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 190-452 |
| Cow position: | chr29:34359064-34358797 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 190-470 |
| Cow position: | chr29:5063063-5063342 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 177, 52 |
| Conread position: | 190-472 |
| Cow position: | chr29:25737502-25737215 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 103 |
| Conread position: | 190-476 |
| Cow position: | chr29:21666003-21666291 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 180, 52 |
| Conread position: | 190-478 |
| Cow position: | chr29:17109884-17110159 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 190-480 |
| Cow position: | chr29:19949217-19949514 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 190-480 |
| Cow position: | chr29:26275528-26275809 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 196-461 |
| Cow position: | chr29:30548695-30548963 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 198-454 |
| Cow position: | chr29:1007740-1008001 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 198-480 |
| Cow position: | chr29:20167346-20167631 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 199-478 |
| Cow position: | chr29:36952375-36952106 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 40, 108 |
| Conread position: | 203-398 |
| Cow position: | chr29:23220573-23220377 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 203-452 |
| Cow position: | chr29:26778807-26779057 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 204-455 |
| Cow position: | chr29:10058610-10058359 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 205-455 |
| Cow position: | chr29:41112944-41112706 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 209-396 |
| Cow position: | chr29:38978464-38978658 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 209-453 |
| Cow position: | chr29:23825286-23825030 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 209-456 |
| Cow position: | chr29:44139311-44139060 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 209-469 |
| Cow position: | chr29:40117505-40117762 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 210-470 |
| Cow position: | chr29:31943800-31944066 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 210-471 |
| Cow position: | chr29:36530801-36531065 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 193 |
| Conread position: | 233-472 |
| Cow position: | chr29:31651365-31651608 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 60 |
Show alignments to all cow chromosomes.