Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-455 |
| Cow position: | chr3:70609500-70609786 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 172-456 |
| Cow position: | chr3:76922789-76922511 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 93 |
| Conread position: | 172-470 |
| Cow position: | chr3:23408478-23408189 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 172-472 |
| Cow position: | chr3:78077067-78077367 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 167, 13 |
| Conread position: | 172-480 |
| Cow position: | chr3:55177877-55177568 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 173-449 |
| Cow position: | chr3:53150203-53150488 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 174-456 |
| Cow position: | chr3:75479878-75480160 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 142 |
| Conread position: | 175-471 |
| Cow position: | chr3:17456388-17456091 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 175-480 |
| Cow position: | chr3:75080646-75080937 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 175-480 |
| Cow position: | chr3:82019965-82019656 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 177-456 |
| Cow position: | chr3:17331607-17331881 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 67, 108 |
| Conread position: | 177-473 |
| Cow position: | chr3:2393082-2392791 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 177-480 |
| Cow position: | chr3:70762242-70761936 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 84 |
| Conread position: | 180-398 |
| Cow position: | chr3:70899777-70899995 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 180-415 |
| Cow position: | chr3:73460847-73461086 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 156 |
| Conread position: | 180-480 |
| Cow position: | chr3:60264834-60264535 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 125 |
| Conread position: | 181-449 |
| Cow position: | chr3:68627802-68627532 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 181-470 |
| Cow position: | chr3:48362963-48363244 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 189, 22 |
| Conread position: | 184-468 |
| Cow position: | chr3:49363002-49363280 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 184-470 |
| Cow position: | chr3:59604732-59605017 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 184-475 |
| Cow position: | chr3:52608069-52608361 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 186-455 |
| Cow position: | chr3:10958354-10958083 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 186-471 |
| Cow position: | chr3:55819639-55819925 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 124 |
| Conread position: | 186-471 |
| Cow position: | chr3:69785737-69785444 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 186-472 |
| Cow position: | chr3:12705657-12705370 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 187-393 |
| Cow position: | chr3:73237086-73237292 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 188-456 |
| Cow position: | chr3:78092621-78092349 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 189-430 |
| Cow position: | chr3:32409104-32409356 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 189-455 |
| Cow position: | chr3:18607557-18607824 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 189-456 |
| Cow position: | chr3:74533241-74533496 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 189-457 |
| Cow position: | chr3:59610828-59610556 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 189-471 |
| Cow position: | chr3:15951019-15950741 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 190-365 |
| Cow position: | chr3:80072020-80072197 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 116 |
| Conread position: | 190-391 |
| Cow position: | chr3:55272153-55271947 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 190-430 |
| Cow position: | chr3:80564857-80565100 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 190-441 |
| Cow position: | chr3:54946022-54946271 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 106 |
| Conread position: | 190-449 |
| Cow position: | chr3:39969974-39969708 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 104 |
| Conread position: | 190-452 |
| Cow position: | chr3:15052058-15051794 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 190-452 |
| Cow position: | chr3:53221908-53222170 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 112, 22 |
| Conread position: | 190-452 |
| Cow position: | chr3:74079745-74079480 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 190-456 |
| Cow position: | chr3:68708110-68707860 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 190-456 |
| Cow position: | chr3:78093490-78093231 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 58 |
| Conread position: | 190-469 |
| Cow position: | chr3:49327835-49328108 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 190-470 |
| Cow position: | chr3:27274423-27274702 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 101 |
| Conread position: | 190-470 |
| Cow position: | chr3:54373965-54373682 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 160, 45 |
| Conread position: | 190-470 |
| Cow position: | chr3:68881218-68880956 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 190-471 |
| Cow position: | chr3:79196653-79196939 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 190-476 |
| Cow position: | chr3:55189863-55189569 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 52, 275 |
| Conread position: | 190-478 |
| Cow position: | chr3:15443836-15443543 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 101 |
| Conread position: | 190-478 |
| Cow position: | chr3:53790643-53790359 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 190-478 |
| Cow position: | chr3:54506597-54506889 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 190-480 |
| Cow position: | chr3:2674922-2675214 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 99 |
| Conread position: | 190-480 |
| Cow position: | chr3:9641459-9641741 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 190-480 |
| Cow position: | chr3:83474633-83474939 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 283 |
| Conread position: | 191-396 |
| Cow position: | chr3:56059702-56059914 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 191-470 |
| Cow position: | chr3:17936946-17936672 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 191-471 |
| Cow position: | chr3:22165523-22165239 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 191-478 |
| Cow position: | chr3:3316918-3316624 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 103, 55 |
| Conread position: | 198-424 |
| Cow position: | chr3:19626608-19626377 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 198-429 |
| Cow position: | chr3:70565836-70565599 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 198-469 |
| Cow position: | chr3:44932414-44932687 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 110 |
| Conread position: | 198-475 |
| Cow position: | chr3:44625262-44624994 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 198-480 |
| Cow position: | chr3:50768584-50768865 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 173, 39 |
| Conread position: | 199-455 |
| Cow position: | chr3:75608399-75608649 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 203-404 |
| Cow position: | chr3:59799154-59799347 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 203-480 |
| Cow position: | chr3:23169160-23168883 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 82 |
| Conread position: | 204-472 |
| Cow position: | chr3:64281024-64280761 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 185 |
| Conread position: | 207-473 |
| Cow position: | chr3:59299486-59299753 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 207-480 |
| Cow position: | chr3:9663261-9662984 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 209-452 |
| Cow position: | chr3:31350193-31349950 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 209-470 |
| Cow position: | chr3:71474496-71474232 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 209-478 |
| Cow position: | chr3:7337871-7337603 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 210-452 |
| Cow position: | chr3:11987242-11987486 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 210-471 |
| Cow position: | chr3:61224833-61224574 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 210-478 |
| Cow position: | chr3:19682605-19682890 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 97 |
| Conread position: | 212-461 |
| Cow position: | chr3:64196739-64196991 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 249 |
| Conread position: | 214-449 |
| Cow position: | chr3:10668962-10668724 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 80, 76 |
| Conread position: | 216-470 |
| Cow position: | chr3:76269816-76270063 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 167, 27 |
| Conread position: | 222-472 |
| Cow position: | chr3:45700732-45700979 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 249-471 |
| Cow position: | chr3:23132217-23131992 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 266-478 |
| Cow position: | chr3:52845520-52845739 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 25, 141 |
Show alignments to all cow chromosomes.