Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 163-472 |
| Cow position: | chr4:34641846-34641530 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 130 |
| Conread position: | 172-452 |
| Cow position: | chr4:3283557-3283280 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 172-452 |
| Cow position: | chr4:21391923-21391645 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 172-456 |
| Cow position: | chr4:54455453-54455168 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 121 |
| Conread position: | 172-459 |
| Cow position: | chr4:40414738-40414447 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 65, 134 |
| Conread position: | 172-469 |
| Cow position: | chr4:35981883-35982188 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 20, 181 |
| Conread position: | 173-392 |
| Cow position: | chr4:34503187-34503412 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 177-410 |
| Cow position: | chr4:17084444-17084205 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 116 |
| Conread position: | 177-472 |
| Cow position: | chr4:19700003-19700305 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 114, 61 |
| Conread position: | 179-456 |
| Cow position: | chr4:52832118-52831837 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 186-424 |
| Cow position: | chr4:23600084-23600315 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 8 |
| Conread position: | 186-469 |
| Cow position: | chr4:47730761-47731054 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 186-472 |
| Cow position: | chr4:31136656-31136948 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 5, 121 |
| Conread position: | 187-470 |
| Cow position: | chr4:61897628-61897361 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 102, 115 |
| Conread position: | 187-472 |
| Cow position: | chr4:3340859-3341148 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 188-473 |
| Cow position: | chr4:17774445-17774171 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 189-348 |
| Cow position: | chr4:11332001-11332165 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 189-452 |
| Cow position: | chr4:28772159-28771895 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 189-456 |
| Cow position: | chr4:17186442-17186170 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 189-473 |
| Cow position: | chr4:13693765-13693480 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 190-398 |
| Cow position: | chr4:38952462-38952665 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 190-425 |
| Cow position: | chr4:68889653-68889424 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 190-446 |
| Cow position: | chr4:25537455-25537718 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 190-453 |
| Cow position: | chr4:42423897-42423630 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 116 |
| Conread position: | 190-456 |
| Cow position: | chr4:38157181-38156915 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 190-456 |
| Cow position: | chr4:38935266-38935536 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 211 |
| Conread position: | 190-456 |
| Cow position: | chr4:51851116-51851390 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 190-470 |
| Cow position: | chr4:36290538-36290813 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 190-472 |
| Cow position: | chr4:1014978-1015264 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 190-472 |
| Cow position: | chr4:33970994-33970711 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 182 |
| Conread position: | 190-472 |
| Cow position: | chr4:34022677-34022393 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 190-473 |
| Cow position: | chr4:3687833-3688123 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 190-473 |
| Cow position: | chr4:4186029-4186311 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 190-473 |
| Cow position: | chr4:20027196-20026911 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 41, 103 |
| Conread position: | 190-478 |
| Cow position: | chr4:38944348-38944060 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 193-456 |
| Cow position: | chr4:13344449-13344714 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 195-368 |
| Cow position: | chr4:11194098-11194273 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 195-455 |
| Cow position: | chr4:48485907-48486173 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 197-472 |
| Cow position: | chr4:60719016-60719285 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 198-431 |
| Cow position: | chr4:48152453-48152218 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 198-472 |
| Cow position: | chr4:51727994-51728268 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 203-455 |
| Cow position: | chr4:54872104-54871846 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 100 |
| Conread position: | 203-472 |
| Cow position: | chr4:21874095-21874371 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 203-473 |
| Cow position: | chr4:46566551-46566276 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 195 |
| Conread position: | 203-478 |
| Cow position: | chr4:21064958-21065223 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 203-480 |
| Cow position: | chr4:37991520-37991789 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 168, 40 |
| Conread position: | 203-480 |
| Cow position: | chr4:69290816-69290540 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 204-480 |
| Cow position: | chr4:44773122-44772836 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 205-456 |
| Cow position: | chr4:8182715-8182456 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 211-478 |
| Cow position: | chr4:20142036-20141789 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 215-469 |
| Cow position: | chr4:17851318-17851070 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 215-471 |
| Cow position: | chr4:4085184-4084916 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 221-394 |
| Cow position: | chr4:65131514-65131336 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 225-479 |
| Cow position: | chr4:26659242-26659500 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 236-470 |
| Cow position: | chr4:68590733-68590960 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 129, 54 |
| Conread position: | 241-449 |
| Cow position: | chr4:38210014-38209804 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 49 |
| Conread position: | 255-456 |
| Cow position: | chr4:34653894-34653697 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
Show alignments to all cow chromosomes.