Cow genome map

Conread name: Ss1.1-rcbl0_019726.5

Conread position: 172-455
Cow position: chr5:56877410-56877682 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 17

Conread position: 172-456
Cow position: chr5:14314448-14314729 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 138

Conread position: 172-456
Cow position: chr5:66551976-66551679 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 237

Conread position: 172-469
Cow position: chr5:11229746-11229446 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 66

Conread position: 172-480
Cow position: chr5:44446945-44446639 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 24, 135

Conread position: 176-480
Cow position: chr5:36039079-36038768 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 209
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 133

Conread position: 177-456
Cow position: chr5:22242844-22242561 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 26

Conread position: 180-472
Cow position: chr5:60016098-60016392 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 127

Conread position: 183-480
Cow position: chr5:49342113-49341796 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 209
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 36

Conread position: 184-466
Cow position: chr5:45397509-45397789 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 49

Conread position: 184-470
Cow position: chr5:61725905-61726184 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 188
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 59, 24

Conread position: 186-456
Cow position: chr5:55955845-55956123 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 105

Conread position: 187-456
Cow position: chr5:40109432-40109697 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 7

Conread position: 187-478
Cow position: chr5:7044766-7044472 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 54, 11

Conread position: 188-477
Cow position: chr5:34976902-34976606 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 116

Conread position: 189-450
Cow position: chr5:65967792-65967526 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 172
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 104

Conread position: 189-471
Cow position: chr5:30629216-30628926 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 105, 21

Conread position: 190-330
Cow position: chr5:34638827-34638967 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 112

Conread position: 190-395
Cow position: chr5:50821725-50821927 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 176

Conread position: 190-409
Cow position: chr5:6045234-6045456 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 185

Conread position: 190-437
Cow position: chr5:44028362-44028111 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 46, 102

Conread position: 190-449
Cow position: chr5:56070799-56071064 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 43, 115

Conread position: 190-449
Cow position: chr5:65752800-65753066 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 119

Conread position: 190-456
Cow position: chr5:30276640-30276900 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 190, 42

Conread position: 190-456
Cow position: chr5:55966936-55966660 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 53

Conread position: 190-456
Cow position: chr5:69337767-69338027 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 9

Conread position: 190-457
Cow position: chr5:30253684-30253954 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 100

Conread position: 190-457
Cow position: chr5:31475627-31475898 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 181
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 104, 53

Conread position: 190-460
Cow position: chr5:35826546-35826815 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 56

Conread position: 190-469
Cow position: chr5:21828809-21829089 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 52, 102

Conread position: 190-470
Cow position: chr5:43402843-43403135 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 42, 120

Conread position: 190-471
Cow position: chr5:30302836-30303108 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 71

Conread position: 190-472
Cow position: chr5:21617400-21617683 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 38

Conread position: 190-472
Cow position: chr5:29903575-29903315 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 104, 46

Conread position: 190-472
Cow position: chr5:46512820-46512540 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 97, 48

Conread position: 190-472
Cow position: chr5:57935166-57934891 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 100

Conread position: 190-472
Cow position: chr5:65941307-65941021 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 18

Conread position: 190-473
Cow position: chr5:35208206-35208492 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 193
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 100

Conread position: 190-478
Cow position: chr5:24996280-24995987 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 43, 64

Conread position: 190-478
Cow position: chr5:59627031-59626734 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 196

Conread position: 190-479
Cow position: chr5:56524112-56524397 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 104

Conread position: 190-480
Cow position: chr5:47601762-47602045 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 180, 46

Conread position: 191-425
Cow position: chr5:60183745-60183982 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 47, 176

Conread position: 191-455
Cow position: chr5:69099662-69099931 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 113

Conread position: 191-456
Cow position: chr5:74643727-74643471 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 101, 47

Conread position: 192-448
Cow position: chr5:50943203-50942957 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 44

Conread position: 198-480
Cow position: chr5:57074382-57074101 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 12

Conread position: 203-470
Cow position: chr5:49474593-49474328 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 91

Conread position: 203-478
Cow position: chr5:45845738-45845454 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 90

Conread position: 203-478
Cow position: chr5:63192786-63192521 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 49, 44

Conread position: 204-465
Cow position: chr5:69461287-69461554 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 234

Conread position: 204-470
Cow position: chr5:56028571-56028319 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 206-430
Cow position: chr5:17602242-17602018 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 37, 30

Conread position: 209-410
Cow position: chr5:61102676-61102871 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 74

Conread position: 209-425
Cow position: chr5:66530879-66531097 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 83

Conread position: 209-471
Cow position: chr5:3582527-3582782 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 173
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 39

Conread position: 209-480
Cow position: chr5:70678678-70678408 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 136, 33

Conread position: 210-456
Cow position: chr5:22667040-22667283 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 32

Conread position: 210-456
Cow position: chr5:66466281-66466526 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 63

Conread position: 212-455
Cow position: chr5:51065496-51065727 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 212-472
Cow position: chr5:9894161-9893897 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 22, 41

Conread position: 212-472
Cow position: chr5:22795178-22795438 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 82

Conread position: 212-473
Cow position: chr5:57686776-57686511 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 96

Conread position: 213-455
Cow position: chr5:30232871-30233122 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 27, 80

Conread position: 213-480
Cow position: chr5:62811789-62812063 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 93

Conread position: 214-471
Cow position: chr5:26549175-26548916 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 246

Conread position: 254-473
Cow position: chr5:51298705-51298485 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 36

Show alignments to all cow chromosomes.