Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-455 |
| Cow position: | chr6:29485027-29485308 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 172-468 |
| Cow position: | chr6:46465760-46466055 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 176-471 |
| Cow position: | chr6:60274069-60273771 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 176-472 |
| Cow position: | chr6:32121850-32122137 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 177-470 |
| Cow position: | chr6:37395464-37395162 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 191 |
| Conread position: | 180-431 |
| Cow position: | chr6:38640176-38640435 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 137 |
| Conread position: | 180-480 |
| Cow position: | chr6:694206-693897 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 184-446 |
| Cow position: | chr6:36921023-36920759 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 186-452 |
| Cow position: | chr6:13687861-13687594 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 186-456 |
| Cow position: | chr6:46860214-46859944 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 186-469 |
| Cow position: | chr6:17068697-17068416 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 187-440 |
| Cow position: | chr6:26915285-26915538 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 187-456 |
| Cow position: | chr6:38853701-38853430 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 108, 49 |
| Conread position: | 187-470 |
| Cow position: | chr6:7128452-7128165 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 189-343 |
| Cow position: | chr6:47640477-47640322 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 189-456 |
| Cow position: | chr6:49398658-49398403 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 47 |
| Conread position: | 189-470 |
| Cow position: | chr6:50504410-50504695 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 190-343 |
| Cow position: | chr6:61608468-61608622 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 190-431 |
| Cow position: | chr6:61269267-61269512 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 190-448 |
| Cow position: | chr6:32287595-32287849 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 74, 98 |
| Conread position: | 190-452 |
| Cow position: | chr6:15305532-15305793 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 101, 52 |
| Conread position: | 190-456 |
| Cow position: | chr6:31535614-31535347 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 190-456 |
| Cow position: | chr6:38207534-38207260 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 190-456 |
| Cow position: | chr6:44194591-44194330 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 190-456 |
| Cow position: | chr6:53460615-53460345 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 105 |
| Conread position: | 190-456 |
| Cow position: | chr6:60144242-60143973 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 101 |
| Conread position: | 190-456 |
| Cow position: | chr6:62669826-62670097 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 154, 14 |
| Conread position: | 190-461 |
| Cow position: | chr6:19264539-19264271 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 190-469 |
| Cow position: | chr6:4383443-4383716 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 190-469 |
| Cow position: | chr6:5609489-5609204 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 190-472 |
| Cow position: | chr6:11192510-11192239 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 115 |
| Conread position: | 190-472 |
| Cow position: | chr6:65870987-65871272 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 190-473 |
| Cow position: | chr6:3350976-3351270 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 49, 121 |
| Conread position: | 190-473 |
| Cow position: | chr6:52478457-52478169 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 190-473 |
| Cow position: | chr6:55282330-55282042 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 190-473 |
| Cow position: | chr6:59603254-59602973 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 190-477 |
| Cow position: | chr6:15243211-15243507 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 190-479 |
| Cow position: | chr6:8966048-8966341 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 106 |
| Conread position: | 190-480 |
| Cow position: | chr6:17414492-17414201 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 45, 234 |
| Conread position: | 190-480 |
| Cow position: | chr6:47574863-47575140 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 112 |
| Conread position: | 190-480 |
| Cow position: | chr6:60468194-60468480 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 191-448 |
| Cow position: | chr6:57571436-57571697 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 191-480 |
| Cow position: | chr6:67451415-67451124 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 192-472 |
| Cow position: | chr6:25615145-25614849 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 196-456 |
| Cow position: | chr6:36202783-36203047 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 196-474 |
| Cow position: | chr6:47520013-47520298 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 198-441 |
| Cow position: | chr6:67643726-67643478 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 90, 104 |
| Conread position: | 198-456 |
| Cow position: | chr6:21231490-21231738 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 198-470 |
| Cow position: | chr6:24468426-24468160 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 198-472 |
| Cow position: | chr6:18118087-18117808 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 198-480 |
| Cow position: | chr6:51581288-51581005 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 203-368 |
| Cow position: | chr6:32853156-32853322 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 203-455 |
| Cow position: | chr6:45690633-45690393 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 203-470 |
| Cow position: | chr6:50577494-50577754 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 85 |
| Conread position: | 204-478 |
| Cow position: | chr6:10106010-10105738 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 207-472 |
| Cow position: | chr6:35319158-35318892 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 208-472 |
| Cow position: | chr6:53024831-53024570 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 209-431 |
| Cow position: | chr6:61524231-61524003 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 209-473 |
| Cow position: | chr6:63065800-63066081 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 210-475 |
| Cow position: | chr6:26155128-26155394 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 236-448 |
| Cow position: | chr6:21470426-21470214 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 247-455 |
| Cow position: | chr6:12761295-12761505 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 301-475 |
| Cow position: | chr6:58173417-58173586 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.