Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 156-480 |
| Cow position: | chr7:30017597-30017271 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 142 |
| Conread position: | 172-368 |
| Cow position: | chr7:26631874-26631675 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 172-368 |
| Cow position: | chr7:48243613-48243809 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 96 |
| Conread position: | 172-393 |
| Cow position: | chr7:28544115-28544342 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 172-400 |
| Cow position: | chr7:38082095-38082329 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 172-401 |
| Cow position: | chr7:23646546-23646787 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 172-438 |
| Cow position: | chr7:50772794-50772521 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 172-450 |
| Cow position: | chr7:26737396-26737119 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 172-455 |
| Cow position: | chr7:4764787-4765066 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 172-470 |
| Cow position: | chr7:14174475-14174202 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 117, 62 |
| Conread position: | 172-471 |
| Cow position: | chr7:39415848-39416149 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 172-472 |
| Cow position: | chr7:23679652-23679349 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 173-474 |
| Cow position: | chr7:28917028-28917346 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 175-470 |
| Cow position: | chr7:23456881-23456583 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 176-437 |
| Cow position: | chr7:63749533-63749270 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 116 |
| Conread position: | 177-444 |
| Cow position: | chr7:39904041-39904306 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 177-469 |
| Cow position: | chr7:30276683-30276978 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 44 |
| Conread position: | 177-470 |
| Cow position: | chr7:428836-428544 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 137 |
| Conread position: | 180-469 |
| Cow position: | chr7:50066169-50065877 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 180-476 |
| Cow position: | chr7:46857016-46856721 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 182-470 |
| Cow position: | chr7:17750888-17750600 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 182-470 |
| Cow position: | chr7:29509896-29510175 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 182-478 |
| Cow position: | chr7:46818548-46818252 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 184-472 |
| Cow position: | chr7:33393261-33393551 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 186-456 |
| Cow position: | chr7:43908157-43908423 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 178 |
| Conread position: | 187-456 |
| Cow position: | chr7:54013326-54013606 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 189-456 |
| Cow position: | chr7:17713514-17713234 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 239 |
| Conread position: | 189-456 |
| Cow position: | chr7:20534830-20535100 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 189-456 |
| Cow position: | chr7:60732681-60732402 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 189-470 |
| Cow position: | chr7:22793308-22793576 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 189-473 |
| Cow position: | chr7:31170993-31170715 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 118 |
| Conread position: | 190-343 |
| Cow position: | chr7:3773309-3773154 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 190-398 |
| Cow position: | chr7:32915069-32915286 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 190-400 |
| Cow position: | chr7:45331498-45331713 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 190-425 |
| Cow position: | chr7:18188268-18188039 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 190-434 |
| Cow position: | chr7:56886550-56886306 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 112, 100 |
| Conread position: | 190-440 |
| Cow position: | chr7:48714811-48715069 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 190-449 |
| Cow position: | chr7:32946027-32946287 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 190-455 |
| Cow position: | chr7:8658473-8658741 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 190-455 |
| Cow position: | chr7:49751086-49751356 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 190-458 |
| Cow position: | chr7:36665291-36665558 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 190-469 |
| Cow position: | chr7:15559645-15559925 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 190-472 |
| Cow position: | chr7:35275121-35274843 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 190-472 |
| Cow position: | chr7:38429752-38429474 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 190-472 |
| Cow position: | chr7:54712378-54712659 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 162 |
| Conread position: | 190-473 |
| Cow position: | chr7:32894290-32893990 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 190-480 |
| Cow position: | chr7:11958476-11958190 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 101, 24 |
| Conread position: | 190-480 |
| Cow position: | chr7:26263700-26263402 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 211 |
| Conread position: | 190-480 |
| Cow position: | chr7:27079586-27079878 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 42, 65 |
| Conread position: | 192-452 |
| Cow position: | chr7:48667373-48667627 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 196-471 |
| Cow position: | chr7:23205666-23205386 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 210 |
| Conread position: | 198-397 |
| Cow position: | chr7:49903737-49903943 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 95 |
| Conread position: | 198-448 |
| Cow position: | chr7:50493959-50494217 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 198-452 |
| Cow position: | chr7:49106234-49105979 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 198-471 |
| Cow position: | chr7:57593395-57593673 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 198-480 |
| Cow position: | chr7:12495142-12494870 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 203-449 |
| Cow position: | chr7:10117-10368 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 203-456 |
| Cow position: | chr7:53053433-53053177 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 203-469 |
| Cow position: | chr7:29300798-29300536 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 203-471 |
| Cow position: | chr7:18544410-18544147 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 150 |
| Conread position: | 203-472 |
| Cow position: | chr7:23761944-23762210 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 203-478 |
| Cow position: | chr7:8089133-8089410 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 105 |
| Conread position: | 204-456 |
| Cow position: | chr7:53382174-53382409 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 212-452 |
| Cow position: | chr7:53785998-53785765 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 212-456 |
| Cow position: | chr7:14316922-14317167 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 222-456 |
| Cow position: | chr7:32884153-32884384 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 223-480 |
| Cow position: | chr7:35088653-35088909 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 227-472 |
| Cow position: | chr7:26871997-26871747 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 232-437 |
| Cow position: | chr7:41872098-41871893 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 232-480 |
| Cow position: | chr7:12488433-12488677 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 233-456 |
| Cow position: | chr7:26909759-26909535 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 233-480 |
| Cow position: | chr7:9077807-9077557 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 240-431 |
| Cow position: | chr7:11487662-11487468 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 241-472 |
| Cow position: | chr7:36996371-36996601 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 242-472 |
| Cow position: | chr7:6044125-6043894 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 251-472 |
| Cow position: | chr7:31523565-31523789 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 53 |
Show alignments to all cow chromosomes.