Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 154-398 |
| Cow position: | chr8:45126347-45126094 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 172-449 |
| Cow position: | chr8:54052217-54052487 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 172-469 |
| Cow position: | chr8:37636085-37635787 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 172-472 |
| Cow position: | chr8:31985173-31985470 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 172-480 |
| Cow position: | chr8:40280596-40280907 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 172-480 |
| Cow position: | chr8:46235611-46235926 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 175-456 |
| Cow position: | chr8:32621079-32620782 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 237 |
| Conread position: | 176-456 |
| Cow position: | chr8:39807504-39807797 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 177-452 |
| Cow position: | chr8:10456380-10456655 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 59, 169 |
| Conread position: | 177-456 |
| Cow position: | chr8:15394946-15394661 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 180-471 |
| Cow position: | chr8:23018595-23018305 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 184-449 |
| Cow position: | chr8:33406928-33406665 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 185 |
| Conread position: | 184-456 |
| Cow position: | chr8:37298395-37298675 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 186-343 |
| Cow position: | chr8:28294923-28294766 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 186-368 |
| Cow position: | chr8:6485010-6484825 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 186-456 |
| Cow position: | chr8:42794395-42794116 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 187-444 |
| Cow position: | chr8:55897888-55897631 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 187-456 |
| Cow position: | chr8:4500417-4500685 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 187-478 |
| Cow position: | chr8:10970757-10971054 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 189-456 |
| Cow position: | chr8:38572344-38572073 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 189-470 |
| Cow position: | chr8:27955228-27954942 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 190-368 |
| Cow position: | chr8:29625042-29624863 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 190-395 |
| Cow position: | chr8:4924496-4924703 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 180, 100 |
| Conread position: | 190-403 |
| Cow position: | chr8:28987626-28987844 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 190-410 |
| Cow position: | chr8:17167494-17167722 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 190-428 |
| Cow position: | chr8:24371789-24371549 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 190-447 |
| Cow position: | chr8:26284927-26284666 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 190-449 |
| Cow position: | chr8:6073890-6073630 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 190-455 |
| Cow position: | chr8:35563259-35563535 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 190-456 |
| Cow position: | chr8:3015401-3015678 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 190-456 |
| Cow position: | chr8:20107856-20107597 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 59 |
| Conread position: | 190-456 |
| Cow position: | chr8:57406688-57406965 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 190-467 |
| Cow position: | chr8:5893871-5894145 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 190-468 |
| Cow position: | chr8:32130164-32130440 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 190-469 |
| Cow position: | chr8:24867816-24867537 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 190-470 |
| Cow position: | chr8:47169870-47170155 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 102 |
| Conread position: | 190-472 |
| Cow position: | chr8:16957557-16957828 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 190-472 |
| Cow position: | chr8:19980154-19979874 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 190-473 |
| Cow position: | chr8:42762503-42762221 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 190-475 |
| Cow position: | chr8:6224508-6224225 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 190-475 |
| Cow position: | chr8:35580708-35580424 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 190-478 |
| Cow position: | chr8:9168889-9168596 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 190-478 |
| Cow position: | chr8:44449669-44449389 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 190-480 |
| Cow position: | chr8:18017446-18017741 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 190-480 |
| Cow position: | chr8:19475158-19474860 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 190-480 |
| Cow position: | chr8:49305822-49305527 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 114 |
| Conread position: | 191-396 |
| Cow position: | chr8:4648959-4648748 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 191-456 |
| Cow position: | chr8:58058670-58058938 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 192-472 |
| Cow position: | chr8:5437689-5437973 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 198-455 |
| Cow position: | chr8:8190130-8189862 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 198-456 |
| Cow position: | chr8:46082103-46082361 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 198-470 |
| Cow position: | chr8:18728721-18728993 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 202-456 |
| Cow position: | chr8:26651225-26651484 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 203-368 |
| Cow position: | chr8:6248936-6248771 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 203-449 |
| Cow position: | chr8:32278409-32278155 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 203-452 |
| Cow position: | chr8:10337097-10336850 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 203-456 |
| Cow position: | chr8:48528023-48527767 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 87, 46 |
| Conread position: | 203-456 |
| Cow position: | chr8:53746637-53746375 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 203-471 |
| Cow position: | chr8:55716693-55716963 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 204-448 |
| Cow position: | chr8:33640304-33640553 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 204-456 |
| Cow position: | chr8:948480-948725 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 159, 95 |
| Conread position: | 204-456 |
| Cow position: | chr8:41219267-41219526 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 204-456 |
| Cow position: | chr8:55884913-55885169 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 204-480 |
| Cow position: | chr8:1303847-1304127 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 204-480 |
| Cow position: | chr8:52772872-52773153 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 144 |
| Conread position: | 205-472 |
| Cow position: | chr8:55089908-55089645 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 215-472 |
| Cow position: | chr8:32133220-32133476 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 217-471 |
| Cow position: | chr8:11863906-11864167 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 246-471 |
| Cow position: | chr8:3914575-3914809 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 249-455 |
| Cow position: | chr8:34060175-34059966 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 258-472 |
| Cow position: | chr8:55194169-55194387 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 301-473 |
| Cow position: | chr8:61848688-61848514 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 69, 156 |
Show alignments to all cow chromosomes.