Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-343 |
| Cow position: | chr9:5763502-5763672 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 172-398 |
| Cow position: | chr9:31078951-31079179 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 172-410 |
| Cow position: | chr9:46316654-46316885 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 117, 66 |
| Conread position: | 172-431 |
| Cow position: | chr9:33119754-33120023 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 172-437 |
| Cow position: | chr9:7953031-7952759 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 132 |
| Conread position: | 172-449 |
| Cow position: | chr9:26279040-26279323 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 172-452 |
| Cow position: | chr9:56453460-56453193 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 223, 17 |
| Conread position: | 172-456 |
| Cow position: | chr9:34957923-34958209 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 77, 135 |
| Conread position: | 172-456 |
| Cow position: | chr9:59013202-59013495 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 172-469 |
| Cow position: | chr9:17871975-17872276 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 290 |
| Conread position: | 172-480 |
| Cow position: | chr9:41728389-41728080 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 172-480 |
| Cow position: | chr9:43757669-43757365 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 173-469 |
| Cow position: | chr9:34286933-34286629 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 174-480 |
| Cow position: | chr9:45285400-45285718 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 175-473 |
| Cow position: | chr9:13670762-13670463 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 177-452 |
| Cow position: | chr9:29006687-29006406 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 118 |
| Conread position: | 177-480 |
| Cow position: | chr9:45141477-45141777 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 175, 58 |
| Conread position: | 181-473 |
| Cow position: | chr9:34374809-34375104 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 113, 40 |
| Conread position: | 186-434 |
| Cow position: | chr9:52267640-52267897 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 186-437 |
| Cow position: | chr9:20848048-20847803 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 186-480 |
| Cow position: | chr9:61303120-61302821 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 122 |
| Conread position: | 187-455 |
| Cow position: | chr9:54493251-54492982 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 187-456 |
| Cow position: | chr9:26344854-26345119 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 187-472 |
| Cow position: | chr9:55795874-55795586 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 190-343 |
| Cow position: | chr9:49293034-49293184 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 190-455 |
| Cow position: | chr9:11299579-11299829 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 190-456 |
| Cow position: | chr9:12910290-12910557 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 111, 53 |
| Conread position: | 190-456 |
| Cow position: | chr9:18380974-18380711 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 190-470 |
| Cow position: | chr9:23955872-23956147 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 190-472 |
| Cow position: | chr9:4341058-4341328 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 190-472 |
| Cow position: | chr9:8636781-8636501 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 190-472 |
| Cow position: | chr9:20091159-20090888 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 99, 171 |
| Conread position: | 190-473 |
| Cow position: | chr9:38793125-38792842 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 190-478 |
| Cow position: | chr9:34410284-34410571 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 190-480 |
| Cow position: | chr9:33584571-33584866 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 191-445 |
| Cow position: | chr9:9552203-9551946 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 195-480 |
| Cow position: | chr9:25557084-25556803 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 197-365 |
| Cow position: | chr9:5219064-5219235 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 198-410 |
| Cow position: | chr9:32981968-32982181 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 165 |
| Conread position: | 198-438 |
| Cow position: | chr9:5263605-5263363 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 198-456 |
| Cow position: | chr9:28747419-28747675 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 162, 48 |
| Conread position: | 203-437 |
| Cow position: | chr9:39011370-39011608 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 203-471 |
| Cow position: | chr9:24887298-24887034 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 141, 30 |
| Conread position: | 206-473 |
| Cow position: | chr9:17840579-17840852 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 209-480 |
| Cow position: | chr9:13169569-13169844 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 210-472 |
| Cow position: | chr9:37199215-37198955 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 214-479 |
| Cow position: | chr9:34024789-34024516 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 214-480 |
| Cow position: | chr9:60394963-60395229 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 215-473 |
| Cow position: | chr9:9686327-9686591 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 231-456 |
| Cow position: | chr9:63361648-63361868 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 59 |
| Conread position: | 232-455 |
| Cow position: | chr9:57131565-57131342 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 138, 169 |
| Conread position: | 239-480 |
| Cow position: | chr9:48017044-48016810 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 50 |
| Conread position: | 301-478 |
| Cow position: | chr9:40984506-40984326 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 160 |
Show alignments to all cow chromosomes.