Cow genome map
| Conread name: | Ss1.1-rcbl0_019726.5 |
| Conread position: | 172-470 |
| Cow position: | chrX:34792384-34792095 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 173-471 |
| Cow position: | chrX:13177540-13177255 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 176-480 |
| Cow position: | chrX:22115386-22115076 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 118, 71 |
| Conread position: | 177-456 |
| Cow position: | chrX:31436409-31436684 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 181-473 |
| Cow position: | chrX:19469571-19469284 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 123 |
| Conread position: | 184-456 |
| Cow position: | chrX:34837122-34836857 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 186-452 |
| Cow position: | chrX:26881629-26881351 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 5, 120 |
| Conread position: | 186-470 |
| Cow position: | chrX:4153096-4152816 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 164 |
| Conread position: | 186-480 |
| Cow position: | chrX:20957187-20957477 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 187-343 |
| Cow position: | chrX:46429879-46429722 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 187-470 |
| Cow position: | chrX:20584266-20584540 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 189-403 |
| Cow position: | chrX:878440-878217 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 189-449 |
| Cow position: | chrX:35542838-35543092 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 189-456 |
| Cow position: | chrX:40685388-40685114 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 189-476 |
| Cow position: | chrX:34505108-34504821 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 215 |
| Conread position: | 190-410 |
| Cow position: | chrX:41884470-41884244 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 190-431 |
| Cow position: | chrX:34532465-34532708 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 190-440 |
| Cow position: | chrX:14275802-14275549 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 190-444 |
| Cow position: | chrX:13647841-13647581 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 190-455 |
| Cow position: | chrX:22074738-22075009 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 190-455 |
| Cow position: | chrX:34313973-34314235 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 190-456 |
| Cow position: | chrX:1466105-1466378 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 190-456 |
| Cow position: | chrX:8869460-8869189 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 190-456 |
| Cow position: | chrX:9201494-9201758 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 190-456 |
| Cow position: | chrX:21986348-21986086 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 54, 105 |
| Conread position: | 190-456 |
| Cow position: | chrX:29542275-29542013 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 117 |
| Conread position: | 190-456 |
| Cow position: | chrX:37781167-37780897 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 178 |
| Conread position: | 190-470 |
| Cow position: | chrX:12437326-12437050 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 101, 112 |
| Conread position: | 190-471 |
| Cow position: | chrX:38549391-38549676 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 190-473 |
| Cow position: | chrX:27431970-27431693 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 190-475 |
| Cow position: | chrX:29050191-29050481 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 190-476 |
| Cow position: | chrX:9252218-9251929 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 101, 72 |
| Conread position: | 190-477 |
| Cow position: | chrX:40035499-40035202 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 190-478 |
| Cow position: | chrX:5118558-5118262 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 190-478 |
| Cow position: | chrX:24365881-24365585 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 190-480 |
| Cow position: | chrX:34411786-34412085 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 118 |
| Conread position: | 191-470 |
| Cow position: | chrX:5134420-5134702 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 191-473 |
| Cow position: | chrX:45976867-45977156 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 247 |
| Conread position: | 191-479 |
| Cow position: | chrX:41027101-41027397 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 195-480 |
| Cow position: | chrX:43115101-43115391 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 196-456 |
| Cow position: | chrX:5919440-5919702 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 196-480 |
| Cow position: | chrX:35985768-35986053 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 198-455 |
| Cow position: | chrX:41871017-41871271 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 47, 92 |
| Conread position: | 198-456 |
| Cow position: | chrX:42927867-42927615 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 172, 37 |
| Conread position: | 198-456 |
| Cow position: | chrX:45110608-45110866 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 198-472 |
| Cow position: | chrX:22393034-22392753 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 199-470 |
| Cow position: | chrX:13913020-13913303 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 202-473 |
| Cow position: | chrX:30337990-30337722 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 203-344 |
| Cow position: | chrX:47362668-47362525 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 203-472 |
| Cow position: | chrX:11326143-11325878 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 203-472 |
| Cow position: | chrX:34376903-34377169 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 204-480 |
| Cow position: | chrX:27306410-27306676 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 163 |
| Conread position: | 209-452 |
| Cow position: | chrX:19394515-19394766 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 196 |
| Conread position: | 209-472 |
| Cow position: | chrX:6599821-6599544 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 263 |
| Conread position: | 211-473 |
| Cow position: | chrX:12979872-12979604 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 213-456 |
| Cow position: | chrX:22482732-22482474 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 199 |
| Conread position: | 213-456 |
| Cow position: | chrX:38642216-38642457 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 157, 194 |
| Conread position: | 214-473 |
| Cow position: | chrX:41941594-41941854 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 230-456 |
| Cow position: | chrX:12972666-12972893 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 230-480 |
| Cow position: | chrX:26843283-26843029 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 231-456 |
| Cow position: | chrX:45383059-45382846 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 233-469 |
| Cow position: | chrX:16836299-16836066 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 57 |
| Conread position: | 238-456 |
| Cow position: | chrX:4466959-4467166 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 238-480 |
| Cow position: | chrX:27145596-27145840 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 241-478 |
| Cow position: | chrX:2935952-2936189 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 243-480 |
| Cow position: | chrX:39290356-39290593 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 124, 138 |
| Conread position: | 244-472 |
| Cow position: | chrX:11656079-11656308 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 250-473 |
| Cow position: | chrX:27668954-27668731 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 54 |
Show alignments to all cow chromosomes.