Cow genome map
| Conread name: | Ss1.1-rcbl0_021057.5 |
| Conread position: | 1-156 |
| Cow position: | chr1:31951784-31951941 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 137 |
| Conread position: | 1-170 |
| Cow position: | chr1:25885674-25885505 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 138 |
| Conread position: | 2-161 |
| Cow position: | chr1:61242148-61242307 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 133 |
| Conread position: | 2-163 |
| Cow position: | chr1:39251419-39251579 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 136 |
| Conread position: | 2-170 |
| Cow position: | chr1:64745323-64745155 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 135 |
| Conread position: | 2-171 |
| Cow position: | chr1:62041805-62041967 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 67 |
| Conread position: | 2-172 |
| Cow position: | chr1:59911011-59911180 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 134 |
| Conread position: | 2-186 |
| Cow position: | chr1:34893004-34893187 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 80, 134 |
| Conread position: | 2-194 |
| Cow position: | chr1:80329521-80329323 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 3-115 |
| Cow position: | chr1:71086160-71086273 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 3-121 |
| Cow position: | chr1:71555369-71555249 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 3-164 |
| Cow position: | chr1:85409436-85409275 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 81, 125 |
| Conread position: | 3-171 |
| Cow position: | chr1:82572811-82572646 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 3-171 |
| Cow position: | chr1:88017400-88017233 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 3-172 |
| Cow position: | chr1:11878754-11878584 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 79, 123 |
| Conread position: | 3-173 |
| Cow position: | chr1:8726277-8726107 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 80, 134 |
| Conread position: | 3-173 |
| Cow position: | chr1:77755281-77755111 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 83, 128 |
| Conread position: | 3-176 |
| Cow position: | chr1:6985410-6985247 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 4-119 |
| Cow position: | chr1:68332766-68332649 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-124 |
| Cow position: | chr1:41092740-41092618 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 4-162 |
| Cow position: | chr1:54217418-54217261 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 131 |
| Conread position: | 4-168 |
| Cow position: | chr1:3746535-3746696 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 4-168 |
| Cow position: | chr1:64098849-64098685 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 4-171 |
| Cow position: | chr1:37432818-37432979 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 4-173 |
| Cow position: | chr1:39244117-39243947 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 130, 77 |
| Conread position: | 4-203 |
| Cow position: | chr1:18223444-18223245 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 80, 131 |
| Conread position: | 4-206 |
| Cow position: | chr1:81371039-81370839 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 5-120 |
| Cow position: | chr1:49728314-49728430 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 5-158 |
| Cow position: | chr1:65155343-65155190 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 78, 131 |
| Conread position: | 5-172 |
| Cow position: | chr1:6865978-6865812 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 131 |
| Conread position: | 7-151 |
| Cow position: | chr1:54365181-54365037 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 129 |
| Conread position: | 7-170 |
| Cow position: | chr1:11831749-11831904 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 8-132 |
| Cow position: | chr1:57757621-57757744 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 8-170 |
| Cow position: | chr1:14560117-14559956 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 9-186 |
| Cow position: | chr1:100388024-100387850 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 129 |
| Conread position: | 10-113 |
| Cow position: | chr1:74713893-74713997 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 10-131 |
| Cow position: | chr1:22072081-22072204 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 10-172 |
| Cow position: | chr1:63134351-63134513 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 126 |
| Conread position: | 11-178 |
| Cow position: | chr1:23510355-23510189 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 45 |
| Conread position: | 12-143 |
| Cow position: | chr1:20135731-20135865 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 13-162 |
| Cow position: | chr1:45979083-45979231 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 13-181 |
| Cow position: | chr1:85675-85842 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 15-170 |
| Cow position: | chr1:9511847-9511694 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 105 |
| Conread position: | 17-172 |
| Cow position: | chr1:78885414-78885261 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 19-127 |
| Cow position: | chr1:69062426-69062536 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 22-170 |
| Cow position: | chr1:2203906-2203757 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 22-170 |
| Cow position: | chr1:52207436-52207585 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 24-172 |
| Cow position: | chr1:95733830-95733688 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 32-179 |
| Cow position: | chr1:53568095-53568242 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 104 |
Show alignments to all cow chromosomes.