Cow genome map
| Conread name: | Ss1.1-rcbl0_021057.5 |
| Conread position: | 2-128 |
| Cow position: | chr11:57153244-57153116 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 2-155 |
| Cow position: | chr11:462685-462838 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 133 |
| Conread position: | 2-169 |
| Cow position: | chr11:44064301-44064468 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 134 |
| Conread position: | 2-170 |
| Cow position: | chr11:43855807-43855647 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 158, 30 |
| Conread position: | 2-172 |
| Cow position: | chr11:25807321-25807151 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 2-172 |
| Cow position: | chr11:64101467-64101636 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 2-179 |
| Cow position: | chr11:30660707-30660883 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 81, 132 |
| Conread position: | 3-162 |
| Cow position: | chr11:34397897-34398055 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 61 |
| Conread position: | 3-168 |
| Cow position: | chr11:22851460-22851620 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 3-170 |
| Cow position: | chr11:1774469-1774302 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 80, 133 |
| Conread position: | 3-170 |
| Cow position: | chr11:15374203-15374361 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 3-170 |
| Cow position: | chr11:16363976-16363809 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 3-172 |
| Cow position: | chr11:21909717-21909548 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 128 |
| Conread position: | 3-178 |
| Cow position: | chr11:74171197-74171027 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 3-178 |
| Cow position: | chr11:77772276-77772110 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 4-170 |
| Cow position: | chr11:34024958-34025114 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 4-184 |
| Cow position: | chr11:55283101-55282920 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 4-204 |
| Cow position: | chr11:19567457-19567645 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 79, 30 |
| Conread position: | 5-132 |
| Cow position: | chr11:15885716-15885845 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 5-158 |
| Cow position: | chr11:9424407-9424557 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 6-168 |
| Cow position: | chr11:25972526-25972364 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 87 |
| Conread position: | 7-116 |
| Cow position: | chr11:35284518-35284627 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 7-130 |
| Cow position: | chr11:34303887-34304011 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 7-170 |
| Cow position: | chr11:57752957-57752795 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 8-123 |
| Cow position: | chr11:40574351-40574234 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 8-173 |
| Cow position: | chr11:38009597-38009432 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 128 |
| Conread position: | 8-174 |
| Cow position: | chr11:3261134-3261295 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 8-175 |
| Cow position: | chr11:55119889-55120056 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 74, 123 |
| Conread position: | 10-120 |
| Cow position: | chr11:27610851-27610964 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 11-122 |
| Cow position: | chr11:18153825-18153710 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 11-132 |
| Cow position: | chr11:77477848-77477728 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 102 |
| Conread position: | 11-132 |
| Cow position: | chr11:77478522-77478402 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 102 |
| Conread position: | 11-171 |
| Cow position: | chr11:27817091-27816934 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 12-172 |
| Cow position: | chr11:54204402-54204244 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 13-158 |
| Cow position: | chr11:18452724-18452582 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-170 |
| Cow position: | chr11:65777340-65777185 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 67, 104 |
| Conread position: | 19-170 |
| Cow position: | chr11:80780556-80780706 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 65, 91 |
| Conread position: | 20-172 |
| Cow position: | chr11:21544470-21544622 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 116 |
| Conread position: | 24-173 |
| Cow position: | chr11:53331219-53331369 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 113 |
| Conread position: | 38-171 |
| Cow position: | chr11:73007317-73007450 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 98 |
Show alignments to all cow chromosomes.