Cow genome map
| Conread name: | Ss1.1-rcbl0_021057.5 |
| Conread position: | 1-175 |
| Cow position: | chr13:14708807-14708982 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 61, 131 |
| Conread position: | 2-118 |
| Cow position: | chr13:25955181-25955064 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 82, 59 |
| Conread position: | 2-132 |
| Cow position: | chr13:10854576-10854444 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 2-178 |
| Cow position: | chr13:59997352-59997179 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 64 |
| Conread position: | 2-182 |
| Cow position: | chr13:38361853-38361676 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 66 |
| Conread position: | 3-120 |
| Cow position: | chr13:51241167-51241287 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 3-163 |
| Cow position: | chr13:18541397-18541553 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 55 |
| Conread position: | 3-170 |
| Cow position: | chr13:57746289-57746458 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 135 |
| Conread position: | 3-172 |
| Cow position: | chr13:14080004-14079840 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 79, 128 |
| Conread position: | 3-175 |
| Cow position: | chr13:12213921-12214093 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 133 |
| Conread position: | 3-177 |
| Cow position: | chr13:20876648-20876473 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 79, 134 |
| Conread position: | 4-120 |
| Cow position: | chr13:6921154-6921037 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 97 |
| Conread position: | 4-132 |
| Cow position: | chr13:28605860-28605989 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 4-162 |
| Cow position: | chr13:55407109-55407264 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 61 |
| Conread position: | 4-168 |
| Cow position: | chr13:34885421-34885585 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 134 |
| Conread position: | 4-171 |
| Cow position: | chr13:22193851-22194015 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 4-173 |
| Cow position: | chr13:24403928-24403763 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 5-162 |
| Cow position: | chr13:18839513-18839665 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 5-169 |
| Cow position: | chr13:15489965-15490127 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 131 |
| Conread position: | 5-172 |
| Cow position: | chr13:44143965-44143799 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 126 |
| Conread position: | 6-132 |
| Cow position: | chr13:2807789-2807915 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 6-170 |
| Cow position: | chr13:4796274-4796435 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 97 |
| Conread position: | 7-172 |
| Cow position: | chr13:43385237-43385400 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 123 |
| Conread position: | 8-120 |
| Cow position: | chr13:51142570-51142459 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 9-174 |
| Cow position: | chr13:27795844-27796010 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 127 |
| Conread position: | 9-175 |
| Cow position: | chr13:48580545-48580379 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 75, 127 |
| Conread position: | 10-158 |
| Cow position: | chr13:19015020-19014872 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 10-179 |
| Cow position: | chr13:33239965-33240132 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 11-173 |
| Cow position: | chr13:698826-698984 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 11-176 |
| Cow position: | chr13:34264656-34264495 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 12-196 |
| Cow position: | chr13:51177602-51177785 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 14-177 |
| Cow position: | chr13:2416499-2416659 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 87 |
| Conread position: | 15-168 |
| Cow position: | chr13:26034454-26034296 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 17-170 |
| Cow position: | chr13:45497720-45497868 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 46-172 |
| Cow position: | chr13:20496476-20496350 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 91 |
Show alignments to all cow chromosomes.