Cow genome map
| Conread name: | Ss1.1-rcbl0_021057.5 |
| Conread position: | 2-132 |
| Cow position: | chr3:79315586-79315711 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 2-160 |
| Cow position: | chr3:83393128-83392969 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 84, 135 |
| Conread position: | 2-162 |
| Cow position: | chr3:27633601-27633441 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 81, 129 |
| Conread position: | 2-168 |
| Cow position: | chr3:52817405-52817569 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 83, 134 |
| Conread position: | 2-170 |
| Cow position: | chr3:24532226-24532392 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 81, 30 |
| Conread position: | 2-170 |
| Cow position: | chr3:36538494-36538320 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 140 |
| Conread position: | 2-172 |
| Cow position: | chr3:41860958-41860788 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 80, 57 |
| Conread position: | 2-177 |
| Cow position: | chr3:49414345-49414176 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 57 |
| Conread position: | 3-127 |
| Cow position: | chr3:4615469-4615595 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 3-158 |
| Cow position: | chr3:5317357-5317202 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 133 |
| Conread position: | 3-163 |
| Cow position: | chr3:74724034-74723874 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 80, 133 |
| Conread position: | 3-171 |
| Cow position: | chr3:31286495-31286333 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 4-125 |
| Cow position: | chr3:73418459-73418588 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-163 |
| Cow position: | chr3:26581666-26581506 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 133 |
| Conread position: | 4-167 |
| Cow position: | chr3:78442480-78442319 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 4-180 |
| Cow position: | chr3:12531713-12531538 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 79, 127 |
| Conread position: | 4-190 |
| Cow position: | chr3:32773601-32773781 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 132 |
| Conread position: | 5-172 |
| Cow position: | chr3:1549723-1549884 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 5-173 |
| Cow position: | chr3:23274562-23274397 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 79, 27 |
| Conread position: | 6-102 |
| Cow position: | chr3:27879522-27879423 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 6-162 |
| Cow position: | chr3:28707353-28707508 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 6-192 |
| Cow position: | chr3:73154362-73154539 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 7-158 |
| Cow position: | chr3:74436317-74436468 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 71, 129 |
| Conread position: | 7-165 |
| Cow position: | chr3:21332405-21332251 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 7-168 |
| Cow position: | chr3:23478638-23478800 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 129 |
| Conread position: | 7-171 |
| Cow position: | chr3:63334301-63334140 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 124, 41 |
| Conread position: | 7-179 |
| Cow position: | chr3:43004397-43004225 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 7-201 |
| Cow position: | chr3:60947788-60947596 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 9-173 |
| Cow position: | chr3:1339312-1339476 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 73, 126 |
| Conread position: | 10-171 |
| Cow position: | chr3:31528241-31528395 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 11-116 |
| Cow position: | chr3:6798586-6798480 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 11-170 |
| Cow position: | chr3:77589796-77589954 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 11-176 |
| Cow position: | chr3:18851797-18851954 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 11-177 |
| Cow position: | chr3:68127499-68127665 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 70, 128 |
| Conread position: | 13-162 |
| Cow position: | chr3:2285101-2285249 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 109 |
| Conread position: | 17-163 |
| Cow position: | chr3:15091288-15091430 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 66, 14 |
| Conread position: | 17-190 |
| Cow position: | chr3:8753873-8754046 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 18-169 |
| Cow position: | chr3:60854422-60854275 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 21-156 |
| Cow position: | chr3:13527045-13527178 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 100 |
| Conread position: | 22-170 |
| Cow position: | chr3:22054213-22054066 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 114 |
Show alignments to all cow chromosomes.