Cow genome map
| Conread name: | Ss1.1-rcbl0_021057.5 |
| Conread position: | 1-169 |
| Cow position: | chr5:15705115-15704949 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 87, 132 |
| Conread position: | 1-212 |
| Cow position: | chr5:47697934-47697727 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 2-156 |
| Cow position: | chr5:54761484-54761639 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 2-169 |
| Cow position: | chr5:54157905-54158066 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 2-169 |
| Cow position: | chr5:58384736-58384905 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 136 |
| Conread position: | 2-172 |
| Cow position: | chr5:29029799-29029963 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 2-177 |
| Cow position: | chr5:67463664-67463839 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 81, 132 |
| Conread position: | 3-172 |
| Cow position: | chr5:21145775-21145606 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 80, 136 |
| Conread position: | 3-179 |
| Cow position: | chr5:5830735-5830566 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 3-191 |
| Cow position: | chr5:9232813-9232633 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 169, 56 |
| Conread position: | 3-209 |
| Cow position: | chr5:56826495-56826700 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 79, 113 |
| Conread position: | 4-117 |
| Cow position: | chr5:56742109-56742223 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 4-169 |
| Cow position: | chr5:15808465-15808305 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-169 |
| Cow position: | chr5:37624529-37624693 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 4-170 |
| Cow position: | chr5:12602346-12602510 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 4-171 |
| Cow position: | chr5:9585295-9585131 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 4-172 |
| Cow position: | chr5:9025634-9025802 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 79, 135 |
| Conread position: | 5-116 |
| Cow position: | chr5:71279109-71279219 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 5-162 |
| Cow position: | chr5:11236035-11236191 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 5-168 |
| Cow position: | chr5:67001893-67002057 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 5-169 |
| Cow position: | chr5:27679368-27679205 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 81, 130 |
| Conread position: | 5-172 |
| Cow position: | chr5:42587453-42587286 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 131 |
| Conread position: | 6-121 |
| Cow position: | chr5:13575297-13575179 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-124 |
| Cow position: | chr5:31944046-31944167 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 6-201 |
| Cow position: | chr5:27493191-27493382 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 117 |
| Conread position: | 6-214 |
| Cow position: | chr5:31551288-31551497 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 173, 32 |
| Conread position: | 7-172 |
| Cow position: | chr5:67579508-67579676 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 115 |
| Conread position: | 8-172 |
| Cow position: | chr5:20648805-20648641 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 128 |
| Conread position: | 8-172 |
| Cow position: | chr5:33516316-33516151 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 123 |
| Conread position: | 10-171 |
| Cow position: | chr5:65590650-65590489 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 127 |
| Conread position: | 10-174 |
| Cow position: | chr5:14072125-14071961 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 11-170 |
| Cow position: | chr5:12581154-12581311 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 123 |
| Conread position: | 11-183 |
| Cow position: | chr5:19299021-19298845 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 155 |
| Conread position: | 12-200 |
| Cow position: | chr5:62580439-62580627 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 71, 119 |
| Conread position: | 17-168 |
| Cow position: | chr5:57629828-57629677 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 17-172 |
| Cow position: | chr5:51953344-51953496 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 22-170 |
| Cow position: | chr5:50159688-50159837 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 114 |
| Conread position: | 31-170 |
| Cow position: | chr5:59640053-59640192 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 104 |
Show alignments to all cow chromosomes.