Cow genome map
| Conread name: | Ss1.1-rcbl0_021057.5 |
| Conread position: | 2-133 |
| Cow position: | chr6:44377741-44377873 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 2-155 |
| Cow position: | chr6:20748856-20749006 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 2-163 |
| Cow position: | chr6:14280127-14280288 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 81, 134 |
| Conread position: | 2-165 |
| Cow position: | chr6:44389776-44389618 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 2-172 |
| Cow position: | chr6:58593675-58593509 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 2-178 |
| Cow position: | chr6:40241156-40241323 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 56 |
| Conread position: | 3-170 |
| Cow position: | chr6:3017937-3018104 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 3-187 |
| Cow position: | chr6:20332784-20332960 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 4-124 |
| Cow position: | chr6:39917638-39917757 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 4-160 |
| Cow position: | chr6:55659519-55659366 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 87 |
| Conread position: | 4-169 |
| Cow position: | chr6:11159523-11159360 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 4-170 |
| Cow position: | chr6:24260338-24260174 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 124 |
| Conread position: | 4-170 |
| Cow position: | chr6:53416486-53416320 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 83, 132 |
| Conread position: | 5-168 |
| Cow position: | chr6:28087041-28086877 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 5-171 |
| Cow position: | chr6:6635616-6635777 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 5-229 |
| Cow position: | chr6:34556981-34557205 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 6-169 |
| Cow position: | chr6:55398268-55398431 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 77, 130 |
| Conread position: | 7-120 |
| Cow position: | chr6:6722624-6722735 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 7-158 |
| Cow position: | chr6:24496456-24496305 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 71, 128 |
| Conread position: | 7-182 |
| Cow position: | chr6:35126639-35126466 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 8-169 |
| Cow position: | chr6:31687716-31687558 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 8-173 |
| Cow position: | chr6:29078204-29078366 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 9-120 |
| Cow position: | chr6:35832028-35832140 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 38 |
| Conread position: | 9-120 |
| Cow position: | chr6:55662210-55662322 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 10-170 |
| Cow position: | chr6:50502070-50502226 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 10-191 |
| Cow position: | chr6:3936150-3935972 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 77, 121 |
| Conread position: | 11-171 |
| Cow position: | chr6:14162142-14161982 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 11-188 |
| Cow position: | chr6:45692191-45692013 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 106 |
| Conread position: | 13-171 |
| Cow position: | chr6:1940011-1939852 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 13-172 |
| Cow position: | chr6:35697939-35697780 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 123 |
| Conread position: | 13-218 |
| Cow position: | chr6:23892032-23892233 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 14-174 |
| Cow position: | chr6:6244262-6244105 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 14-192 |
| Cow position: | chr6:35266009-35265841 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 15-158 |
| Cow position: | chr6:44771309-44771445 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 15-172 |
| Cow position: | chr6:28008974-28008817 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 121 |
| Conread position: | 16-172 |
| Cow position: | chr6:16495130-16494974 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 113, 73 |
| Conread position: | 18-132 |
| Cow position: | chr6:37085379-37085492 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 20-163 |
| Cow position: | chr6:13092589-13092446 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 116 |
| Conread position: | 32-169 |
| Cow position: | chr6:24337574-24337436 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 107 |
| Conread position: | 35-175 |
| Cow position: | chr6:30287046-30287185 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 99 |
Show alignments to all cow chromosomes.