Cow genome map
| Conread name: | Ss1.1-rcbl0_021057.5 |
| Conread position: | 1-163 |
| Cow position: | chrX:11675531-11675695 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 2-170 |
| Cow position: | chrX:1330340-1330173 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 81, 134 |
| Conread position: | 3-120 |
| Cow position: | chrX:956948-957067 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 3-142 |
| Cow position: | chrX:25921340-25921204 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 3-164 |
| Cow position: | chrX:37236464-37236622 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 3-165 |
| Cow position: | chrX:1427734-1427895 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 102 |
| Conread position: | 3-168 |
| Cow position: | chrX:4019462-4019297 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 136 |
| Conread position: | 3-169 |
| Cow position: | chrX:35552804-35552964 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 118 |
| Conread position: | 3-171 |
| Cow position: | chrX:37749116-37749286 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 133 |
| Conread position: | 3-171 |
| Cow position: | chrX:40353771-40353935 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 3-172 |
| Cow position: | chrX:4625373-4625541 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 84, 132 |
| Conread position: | 3-172 |
| Cow position: | chrX:13403284-13403121 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 3-173 |
| Cow position: | chrX:40350365-40350528 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 162, 73 |
| Conread position: | 3-176 |
| Cow position: | chrX:6672241-6672409 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 3-180 |
| Cow position: | chrX:4440313-4440488 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 81, 56 |
| Conread position: | 4-172 |
| Cow position: | chrX:6472171-6472338 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 4-177 |
| Cow position: | chrX:18518496-18518669 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 4-190 |
| Cow position: | chrX:21816730-21816907 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 5-131 |
| Cow position: | chrX:19017775-19017645 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 5-154 |
| Cow position: | chrX:37957024-37957174 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 76, 132 |
| Conread position: | 5-175 |
| Cow position: | chrX:4590409-4590579 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 77, 132 |
| Conread position: | 5-176 |
| Cow position: | chrX:11983054-11983216 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 119, 77 |
| Conread position: | 6-132 |
| Cow position: | chrX:2147775-2147899 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 6-156 |
| Cow position: | chrX:4630913-4630764 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 87 |
| Conread position: | 6-178 |
| Cow position: | chrX:20505168-20505337 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 77, 133 |
| Conread position: | 6-186 |
| Cow position: | chrX:25653547-25653729 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 129 |
| Conread position: | 7-170 |
| Cow position: | chrX:37980848-37981008 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 8-163 |
| Cow position: | chrX:27458266-27458119 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 8-170 |
| Cow position: | chrX:9910290-9910132 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 9-180 |
| Cow position: | chrX:5956871-5956703 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 116 |
| Conread position: | 10-168 |
| Cow position: | chrX:19391807-19391650 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 10-178 |
| Cow position: | chrX:23253748-23253584 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 11-162 |
| Cow position: | chrX:25453638-25453790 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 11-170 |
| Cow position: | chrX:16817115-16817267 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 11-178 |
| Cow position: | chrX:18699892-18699726 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 67, 125 |
| Conread position: | 17-173 |
| Cow position: | chrX:24286533-24286685 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 20-171 |
| Cow position: | chrX:503087-502936 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 116 |
| Conread position: | 20-184 |
| Cow position: | chrX:30729307-30729141 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 116 |
| Conread position: | 32-162 |
| Cow position: | chrX:18408226-18408358 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 34-196 |
| Cow position: | chrX:19216433-19216272 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 102 |
Show alignments to all cow chromosomes.