Cow genome map
| Conread name: | Ss1.1-rcbl0_022921.5 |
| Conread position: | 350-489 |
| Cow position: | chr11:26073887-26073746 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 126 |
| Conread position: | 350-492 |
| Cow position: | chr11:66730166-66730300 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 353-492 |
| Cow position: | chr11:17281399-17281260 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 359-471 |
| Cow position: | chr11:76372913-76372801 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 359-484 |
| Cow position: | chr11:49558605-49558475 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 359-489 |
| Cow position: | chr11:26123842-26123709 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 359-489 |
| Cow position: | chr11:47759192-47759059 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 359-492 |
| Cow position: | chr11:23249382-23249249 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 359-492 |
| Cow position: | chr11:26069958-26069821 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 359-492 |
| Cow position: | chr11:35894815-35894684 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 365-479 |
| Cow position: | chr11:2833423-2833536 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 365-484 |
| Cow position: | chr11:27668903-27668782 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 366-473 |
| Cow position: | chr11:15943269-15943162 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-485 |
| Cow position: | chr11:53286075-53285955 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 366-487 |
| Cow position: | chr11:19101398-19101278 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:4026513-4026394 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:4269306-4269183 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:10848547-10848670 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:11989228-11989350 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:12357316-12357184 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:17119249-17119126 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:17547258-17547375 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:23881126-23881245 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:24394410-24394532 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:26548620-26548747 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:28053547-28053424 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:29667511-29667380 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:30122750-30122627 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:38834353-38834230 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:41169601-41169478 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:44156167-44156044 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:44582247-44582125 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:58135489-58135612 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:67845475-67845354 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:71330690-71330817 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:72309943-72309820 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-489 |
| Cow position: | chr11:85392739-85392616 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-491 |
| Cow position: | chr11:1494939-1494814 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:1489073-1488951 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 83 |
| Conread position: | 366-492 |
| Cow position: | chr11:3494084-3494210 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:9156056-9155931 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 61, 107 |
| Conread position: | 366-492 |
| Cow position: | chr11:9733582-9733460 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:17106587-17106461 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:19062977-19062856 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:20733143-20733014 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:28228673-28228547 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:29612900-29612774 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:30253328-30253449 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 106, 24 |
| Conread position: | 366-492 |
| Cow position: | chr11:32452923-32453052 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:37358381-37358510 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 366-492 |
| Cow position: | chr11:44517769-44517643 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:47738445-47738319 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:50836573-50836447 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:57626957-57626831 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-492 |
| Cow position: | chr11:63654239-63654113 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 367-488 |
| Cow position: | chr11:53430935-53430819 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 367-488 |
| Cow position: | chr11:54216162-54216043 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 367-489 |
| Cow position: | chr11:43513528-43513407 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 367-492 |
| Cow position: | chr11:50949232-50949107 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 367-492 |
| Cow position: | chr11:67451588-67451713 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-482 |
| Cow position: | chr11:52420499-52420613 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-492 |
| Cow position: | chr11:73134414-73134524 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-485 |
| Cow position: | chr11:31927270-31927369 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.