Cow genome map
| Conread name: | Ss1.1-rcbl0_023872.5 |
| Conread position: | 374-612 |
| Cow position: | chrX:37959922-37960163 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 134 |
| Conread position: | 383-612 |
| Cow position: | chrX:10301448-10301677 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 138 |
| Conread position: | 387-612 |
| Cow position: | chrX:9837448-9837675 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 206 |
| Conread position: | 388-512 |
| Cow position: | chrX:23974110-23973986 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 389-567 |
| Cow position: | chrX:25340368-25340549 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 391-537 |
| Cow position: | chrX:6645896-6646045 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 407-544 |
| Cow position: | chrX:22963462-22963319 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 407-586 |
| Cow position: | chrX:936431-936606 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 407-605 |
| Cow position: | chrX:33172611-33172419 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 134 |
| Conread position: | 407-606 |
| Cow position: | chrX:24923202-24923400 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 407-611 |
| Cow position: | chrX:6494976-6494776 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 407-612 |
| Cow position: | chrX:1342916-1342712 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 407-612 |
| Cow position: | chrX:11406035-11406234 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 407-612 |
| Cow position: | chrX:11674408-11674612 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 407-612 |
| Cow position: | chrX:13800471-13800268 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 407-612 |
| Cow position: | chrX:21196374-21196579 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 184 |
| Conread position: | 407-612 |
| Cow position: | chrX:23193237-23193032 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 28, 184 |
| Conread position: | 407-612 |
| Cow position: | chrX:26844860-26845062 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 407-613 |
| Cow position: | chrX:508800-508602 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 411-612 |
| Cow position: | chrX:20445792-20445592 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 162 |
| Conread position: | 412-612 |
| Cow position: | chrX:388864-389064 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 412-612 |
| Cow position: | chrX:15345223-15345423 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 412-612 |
| Cow position: | chrX:22102417-22102217 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 144 |
| Conread position: | 412-612 |
| Cow position: | chrX:37955258-37955455 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 412-612 |
| Cow position: | chrX:42539956-42540156 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 179 |
| Conread position: | 412-614 |
| Cow position: | chrX:29010075-29010281 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 412-623 |
| Cow position: | chrX:27646770-27646975 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 413-612 |
| Cow position: | chrX:13138857-13138658 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 79 |
| Conread position: | 413-612 |
| Cow position: | chrX:37795120-37794924 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 413-612 |
| Cow position: | chrX:39383723-39383525 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 416-612 |
| Cow position: | chrX:33003611-33003808 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 416-612 |
| Cow position: | chrX:41796900-41797096 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 175 |
| Conread position: | 416-614 |
| Cow position: | chrX:2790598-2790796 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 69 |
| Conread position: | 417-612 |
| Cow position: | chrX:20970278-20970476 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 419-612 |
| Cow position: | chrX:31778071-31777878 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 172 |
| Conread position: | 421-612 |
| Cow position: | chrX:4665253-4665064 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 434-611 |
| Cow position: | chrX:10905590-10905414 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 437-613 |
| Cow position: | chrX:29432896-29433073 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 104, 161 |
| Conread position: | 440-612 |
| Cow position: | chrX:23819839-23819667 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 139 |
Show alignments to all cow chromosomes.