Cow genome map

Conread name: Ss1.1-rcbr0_004351.5

Conread position: 217-432
Cow position: chr20:9379794-9379577 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 25

Conread position: 225-431
Cow position: chr20:34348910-34349127 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 143, 0

Conread position: 227-440
Cow position: chr20:33434854-33435076 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 120

Conread position: 236-455
Cow position: chr20:37273286-37273061 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 18

Conread position: 243-457
Cow position: chr20:600586-600368 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 244-455
Cow position: chr20:25464764-25464982 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 17

Conread position: 244-476
Cow position: chr20:29990164-29990403 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 55

Conread position: 246-440
Cow position: chr20:2316148-2316346 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 89, 13

Conread position: 247-440
Cow position: chr20:17841019-17840824 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 30

Conread position: 248-379
Cow position: chr20:5729855-5729724 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 248-379
Cow position: chr20:34918684-34918556 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 249-474
Cow position: chr20:30744442-30744675 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 12

Conread position: 250-440
Cow position: chr20:37919102-37919291 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 33

Conread position: 250-455
Cow position: chr20:25953543-25953327 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 112, 18

Conread position: 251-456
Cow position: chr20:31845004-31845222 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 20, 15

Conread position: 252-452
Cow position: chr20:20967592-20967388 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 75, 15

Conread position: 253-441
Cow position: chr20:5950361-5950565 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 257-437
Cow position: chr20:11548461-11548642 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 103, 14

Conread position: 259-378
Cow position: chr20:26561945-26562065 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 259-440
Cow position: chr20:14807150-14806966 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 100, 26

Conread position: 259-452
Cow position: chr20:27323538-27323333 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 259-452
Cow position: chr20:28249451-28249247 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 260-433
Cow position: chr20:13023232-13023416 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 260-441
Cow position: chr20:21279644-21279464 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 89, 17

Conread position: 260-445
Cow position: chr20:11499272-11499082 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 129

Conread position: 260-457
Cow position: chr20:21018689-21018486 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 0

Conread position: 261-379
Cow position: chr20:23384563-23384444 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 261-430
Cow position: chr20:17733290-17733470 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 261-440
Cow position: chr20:11359373-11359553 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 16

Conread position: 261-440
Cow position: chr20:34097680-34097874 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 261-441
Cow position: chr20:32636067-32636253 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 105, 0

Conread position: 261-454
Cow position: chr20:37609888-37609687 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 118, 10

Conread position: 262-378
Cow position: chr20:18500796-18500679 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 262-440
Cow position: chr20:3141840-3141653 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 15

Conread position: 262-440
Cow position: chr20:7934548-7934362 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 80

Conread position: 263-379
Cow position: chr20:34251405-34251521 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 263-440
Cow position: chr20:4891856-4892040 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 108, 19

Conread position: 263-441
Cow position: chr20:4755570-4755755 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 109, 0

Conread position: 263-453
Cow position: chr20:12334596-12334400 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 263-455
Cow position: chr20:17369979-17370188 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 20, 163

Conread position: 264-439
Cow position: chr20:11741053-11741225 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 156, 86

Conread position: 264-441
Cow position: chr20:14490508-14490324 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 47

Conread position: 264-441
Cow position: chr20:14755581-14755762 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 102, 21

Conread position: 264-452
Cow position: chr20:34202903-34202702 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 68, 20

Conread position: 265-378
Cow position: chr20:11909422-11909535 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 24, 41

Conread position: 265-441
Cow position: chr20:35589421-35589606 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 266-440
Cow position: chr20:12581695-12581875 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 267-409
Cow position: chr20:21169509-21169651 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 267-452
Cow position: chr20:5268580-5268775 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 103, 172

Conread position: 268-440
Cow position: chr20:21941685-21941513 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 48

Conread position: 268-441
Cow position: chr20:20202479-20202297 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 268-448
Cow position: chr20:24883101-24883294 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 268-452
Cow position: chr20:17251979-17251784 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 94

Conread position: 268-452
Cow position: chr20:35146273-35146088 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 9

Conread position: 268-453
Cow position: chr20:27315236-27315045 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 123

Conread position: 269-379
Cow position: chr20:18400195-18400085 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 269-441
Cow position: chr20:8409200-8409379 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 270-452
Cow position: chr20:14739566-14739752 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 22

Conread position: 270-452
Cow position: chr20:34083980-34083782 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 271-379
Cow position: chr20:19312415-19312520 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 271-425
Cow position: chr20:4944997-4945160 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 96, 16

Conread position: 271-437
Cow position: chr20:23428296-23428460 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 48

Conread position: 271-438
Cow position: chr20:14433163-14433340 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 271-440
Cow position: chr20:4789609-4789772 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 150, 22

Conread position: 271-440
Cow position: chr20:35310586-35310404 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 271-442
Cow position: chr20:26424664-26424483 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 271-452
Cow position: chr20:23549013-23548821 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 107, 0

Conread position: 271-457
Cow position: chr20:11002660-11002463 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 272-438
Cow position: chr20:41313635-41313468 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 128

Conread position: 272-441
Cow position: chr20:23540916-23541083 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 149, 46

Conread position: 272-441
Cow position: chr20:34393360-34393535 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 34

Conread position: 272-452
Cow position: chr20:14917525-14917352 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 138, 17

Conread position: 278-440
Cow position: chr20:21210277-21210112 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 88

Conread position: 279-441
Cow position: chr20:33076574-33076745 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 15

Conread position: 279-445
Cow position: chr20:34271578-34271401 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 279-452
Cow position: chr20:35442033-35442215 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 280-376
Cow position: chr20:36366066-36365970 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 280-379
Cow position: chr20:6473983-6473883 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 280-408
Cow position: chr20:19622998-19623132 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 280-424
Cow position: chr20:29755026-29754872 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 280-440
Cow position: chr20:1824384-1824549 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 280-440
Cow position: chr20:2298550-2298707 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 86, 14

Conread position: 280-440
Cow position: chr20:7132874-7132705 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 280-441
Cow position: chr20:19201782-19201609 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 280-452
Cow position: chr20:19237319-19237142 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 77

Conread position: 280-452
Cow position: chr20:19919571-19919749 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 282-440
Cow position: chr20:7737989-7738152 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 283-445
Cow position: chr20:31148395-31148231 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 129, 0

Conread position: 285-379
Cow position: chr20:20124789-20124883 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 285-408
Cow position: chr20:13034091-13034218 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 285-452
Cow position: chr20:14283165-14282987 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 92, 0

Conread position: 285-466
Cow position: chr20:5991582-5991404 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 136, 71

Conread position: 288-440
Cow position: chr20:11008412-11008249 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 289-440
Cow position: chr20:4334300-4334451 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 132, 86

Conread position: 298-440
Cow position: chr20:14880015-14879868 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 301-440
Cow position: chr20:354672-354822 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.