Cow genome map

Conread name: Ss1.1-rcbr0_004351.5

Conread position: 216-378
Cow position: chr23:17792157-17792315 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 236-445
Cow position: chr23:15286904-15287104 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 175, 13

Conread position: 242-379
Cow position: chr23:12031659-12031517 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 243-445
Cow position: chr23:10676100-10675885 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 244-379
Cow position: chr23:15099684-15099818 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 23

Conread position: 244-440
Cow position: chr23:4803206-4802997 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 45, 17

Conread position: 244-457
Cow position: chr23:2471251-2471024 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 26

Conread position: 245-440
Cow position: chr23:1490598-1490399 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 246-455
Cow position: chr23:32621534-32621306 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 247-438
Cow position: chr23:39778632-39778442 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 120, 13

Conread position: 249-445
Cow position: chr23:39056996-39056790 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 22

Conread position: 250-429
Cow position: chr23:5453701-5453510 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 250-432
Cow position: chr23:4338110-4338300 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 250-440
Cow position: chr23:41348387-41348585 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 250-513
Cow position: chr23:40737779-40738052 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 22, 35

Conread position: 252-440
Cow position: chr23:20539615-20539424 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 30, 9

Conread position: 255-452
Cow position: chr23:25884195-25883993 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 115, 5

Conread position: 257-441
Cow position: chr23:8293743-8293539 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 258-437
Cow position: chr23:40348419-40348603 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 24

Conread position: 258-438
Cow position: chr23:33232471-33232661 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 119, 0

Conread position: 259-440
Cow position: chr23:307689-307494 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 16, 0

Conread position: 261-440
Cow position: chr23:4003876-4003685 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 261-440
Cow position: chr23:8063757-8063583 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 103

Conread position: 261-441
Cow position: chr23:23104268-23104450 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 16

Conread position: 262-436
Cow position: chr23:34264526-34264709 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 262-440
Cow position: chr23:18901841-18902016 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 158, 94

Conread position: 263-445
Cow position: chr23:27026869-27027056 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 8

Conread position: 264-418
Cow position: chr23:21539378-21539216 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 20

Conread position: 264-440
Cow position: chr23:12363396-12363579 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 264-440
Cow position: chr23:35239574-35239390 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 117, 55

Conread position: 265-430
Cow position: chr23:3890349-3890525 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 174

Conread position: 266-376
Cow position: chr23:2111001-2110889 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 266-409
Cow position: chr23:22704793-22704655 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 12

Conread position: 266-452
Cow position: chr23:11225074-11224882 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 111, 11

Conread position: 267-436
Cow position: chr23:28574928-28574749 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 137

Conread position: 267-437
Cow position: chr23:16447472-16447647 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 268-378
Cow position: chr23:1337092-1337198 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 268-378
Cow position: chr23:25726560-25726453 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 268-432
Cow position: chr23:1429612-1429779 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 268-437
Cow position: chr23:39813723-39813539 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 268-440
Cow position: chr23:30617255-30617440 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 269-452
Cow position: chr23:5617791-5617600 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 8

Conread position: 270-394
Cow position: chr23:19295327-19295200 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 270-437
Cow position: chr23:13410546-13410714 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 109, 12

Conread position: 270-439
Cow position: chr23:17392825-17392659 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 20, 88

Conread position: 270-452
Cow position: chr23:10888483-10888301 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 111, 12

Conread position: 271-432
Cow position: chr23:40081715-40081559 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 149, 86

Conread position: 271-436
Cow position: chr23:41107803-41107978 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 271-440
Cow position: chr23:18739245-18739426 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 109, 0

Conread position: 271-440
Cow position: chr23:20557625-20557806 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 271-452
Cow position: chr23:13073631-13073812 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 49

Conread position: 271-452
Cow position: chr23:36200616-36200431 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 109

Conread position: 271-453
Cow position: chr23:4291573-4291380 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 109, 0

Conread position: 272-432
Cow position: chr23:18489869-18489702 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 272-434
Cow position: chr23:20271917-20272087 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 272-452
Cow position: chr23:809722-809532 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 107, 83

Conread position: 272-459
Cow position: chr23:11250906-11250709 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 97, 70

Conread position: 273-372
Cow position: chr23:6672414-6672513 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 273-379
Cow position: chr23:5605479-5605373 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 273-379
Cow position: chr23:5612739-5612633 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 273-452
Cow position: chr23:19739348-19739540 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 274-367
Cow position: chr23:24479710-24479803 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 277-445
Cow position: chr23:1759459-1759280 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 280-378
Cow position: chr23:3244707-3244806 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 280-432
Cow position: chr23:1194288-1194445 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 280-440
Cow position: chr23:7709989-7709829 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 85

Conread position: 280-440
Cow position: chr23:25933355-25933196 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 141, 68

Conread position: 280-441
Cow position: chr23:10853254-10853083 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 100, 46

Conread position: 281-419
Cow position: chr23:18710266-18710398 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 281-452
Cow position: chr23:16582701-16582883 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 283-441
Cow position: chr23:12138212-12138047 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 94, 52

Conread position: 285-378
Cow position: chr23:799464-799557 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 285-378
Cow position: chr23:27307950-27307857 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 285-440
Cow position: chr23:9726337-9726503 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 285-452
Cow position: chr23:13137737-13137909 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 80, 0

Conread position: 285-452
Cow position: chr23:40444058-40443887 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 285-474
Cow position: chr23:35930150-35929956 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 34

Conread position: 289-438
Cow position: chr23:26949389-26949237 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 289-447
Cow position: chr23:26975269-26975436 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 291-452
Cow position: chr23:21423962-21423794 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 80, 0

Conread position: 297-476
Cow position: chr23:14580930-14580753 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 53, 19

Show alignments to all cow chromosomes.