Cow genome map
| Conread name: | Ss1.1-rcbr0_004351.5 |
| Conread position: | 177-379 |
| Cow position: | chr24:18754720-18754516 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 217-441 |
| Cow position: | chr24:26808833-26808602 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 239-474 |
| Cow position: | chr24:22420185-22419939 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 243-378 |
| Cow position: | chr24:12121117-12120981 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 244-437 |
| Cow position: | chr24:39523235-39523434 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 244-441 |
| Cow position: | chr24:38478178-38478381 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 245-451 |
| Cow position: | chr24:35310936-35310724 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 12 |
| Conread position: | 245-457 |
| Cow position: | chr24:22567324-22567098 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 246-456 |
| Cow position: | chr24:12200191-12200414 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 250-430 |
| Cow position: | chr24:13114952-13114777 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 251-439 |
| Cow position: | chr24:11035302-11035493 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 156 |
| Conread position: | 252-419 |
| Cow position: | chr24:28303155-28303321 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 253-433 |
| Cow position: | chr24:16641117-16640929 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 127, 8 |
| Conread position: | 253-462 |
| Cow position: | chr24:20017216-20017439 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 255-440 |
| Cow position: | chr24:30229673-30229485 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 256-378 |
| Cow position: | chr24:23637597-23637717 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 256-440 |
| Cow position: | chr24:27906643-27906450 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 256-440 |
| Cow position: | chr24:39910829-39911021 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 256-445 |
| Cow position: | chr24:18405072-18405274 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 256-452 |
| Cow position: | chr24:28700249-28700052 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 257-445 |
| Cow position: | chr24:27149589-27149390 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 257-452 |
| Cow position: | chr24:18541250-18541450 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 257-456 |
| Cow position: | chr24:26001592-26001382 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 258-431 |
| Cow position: | chr24:3057128-3056952 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 259-440 |
| Cow position: | chr24:6677837-6677658 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 259-441 |
| Cow position: | chr24:885248-885431 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 259-452 |
| Cow position: | chr24:29677704-29677916 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 261-441 |
| Cow position: | chr24:21606474-21606666 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 172 |
| Conread position: | 261-452 |
| Cow position: | chr24:36286768-36286569 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 262-436 |
| Cow position: | chr24:18137101-18137286 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 263-410 |
| Cow position: | chr24:2358987-2359139 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 263-440 |
| Cow position: | chr24:26588415-26588232 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 263-445 |
| Cow position: | chr24:18811031-18810838 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 265-437 |
| Cow position: | chr24:18874625-18874806 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 266-452 |
| Cow position: | chr24:25970891-25971074 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 268-380 |
| Cow position: | chr24:35210253-35210138 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 268-435 |
| Cow position: | chr24:27219900-27220073 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 268-440 |
| Cow position: | chr24:17308948-17309125 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 167 |
| Conread position: | 268-441 |
| Cow position: | chr24:19801031-19800858 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 152 |
| Conread position: | 268-445 |
| Cow position: | chr24:36554507-36554691 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 268-452 |
| Cow position: | chr24:39903815-39904004 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 268-453 |
| Cow position: | chr24:390292-390102 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 268-457 |
| Cow position: | chr24:11921718-11921916 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 269-433 |
| Cow position: | chr24:27719341-27719508 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 270-440 |
| Cow position: | chr24:19187123-19186949 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 271-440 |
| Cow position: | chr24:11840373-11840199 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 107, 53 |
| Conread position: | 271-441 |
| Cow position: | chr24:25947670-25947851 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 271-457 |
| Cow position: | chr24:17567661-17567479 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 45 |
| Conread position: | 272-378 |
| Cow position: | chr24:35660319-35660213 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 272-441 |
| Cow position: | chr24:13353215-13353050 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 272-441 |
| Cow position: | chr24:20801157-20801335 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 274-440 |
| Cow position: | chr24:37974797-37974969 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 274-445 |
| Cow position: | chr24:31383296-31383123 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 277-440 |
| Cow position: | chr24:33372729-33372564 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 109 |
| Conread position: | 278-425 |
| Cow position: | chr24:39914757-39914607 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 280-379 |
| Cow position: | chr24:18324099-18324199 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 280-379 |
| Cow position: | chr24:25142798-25142698 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 280-408 |
| Cow position: | chr24:6739994-6740128 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 280-438 |
| Cow position: | chr24:18750891-18750721 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 280-440 |
| Cow position: | chr24:27844352-27844516 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 280-441 |
| Cow position: | chr24:27279683-27279527 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 38 |
| Conread position: | 280-455 |
| Cow position: | chr24:13586810-13586996 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 280-455 |
| Cow position: | chr24:14550971-14550791 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 283-436 |
| Cow position: | chr24:28722056-28721903 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 128 |
| Conread position: | 283-438 |
| Cow position: | chr24:24532348-24532187 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 78, 106 |
| Conread position: | 284-451 |
| Cow position: | chr24:16995054-16994882 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 285-394 |
| Cow position: | chr24:33238079-33238189 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 285-433 |
| Cow position: | chr24:27810324-27810176 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 285-434 |
| Cow position: | chr24:38693702-38693860 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 285-434 |
| Cow position: | chr24:43445836-43445996 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 285-440 |
| Cow position: | chr24:37252332-37252169 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 285-441 |
| Cow position: | chr24:18702575-18702409 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 285-452 |
| Cow position: | chr24:19000218-19000047 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 285-452 |
| Cow position: | chr24:25194441-25194265 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 289-440 |
| Cow position: | chr24:27713239-27713393 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 289-441 |
| Cow position: | chr24:23000172-23000024 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 289-453 |
| Cow position: | chr24:2992709-2992882 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 73, 108 |
| Conread position: | 291-440 |
| Cow position: | chr24:43832691-43832540 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 294-440 |
| Cow position: | chr24:25122503-25122353 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 297-455 |
| Cow position: | chr24:19637749-19637579 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.