Cow genome map
| Conread name: | Ss1.1-rcbr0_004351.5 |
| Conread position: | 161-452 |
| Cow position: | chr25:17919304-17918996 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 214-429 |
| Cow position: | chr25:7185005-7185231 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 225-398 |
| Cow position: | chr25:14658870-14659043 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 57 |
| Conread position: | 225-440 |
| Cow position: | chr25:32745590-32745372 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 229-455 |
| Cow position: | chr25:7311142-7311377 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 241-378 |
| Cow position: | chr25:20018388-20018250 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 244-436 |
| Cow position: | chr25:28423384-28423183 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 126, 23 |
| Conread position: | 248-378 |
| Cow position: | chr25:26909078-26909208 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 76 |
| Conread position: | 248-460 |
| Cow position: | chr25:13855709-13855489 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 250-441 |
| Cow position: | chr25:17725268-17725073 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 254-360 |
| Cow position: | chr25:36033562-36033456 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-453 |
| Cow position: | chr25:20788600-20788800 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 180 |
| Conread position: | 255-454 |
| Cow position: | chr25:35109056-35109251 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 165, 42 |
| Conread position: | 257-452 |
| Cow position: | chr25:28662335-28662132 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 259-424 |
| Cow position: | chr25:6190123-6190293 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 259-451 |
| Cow position: | chr25:18201705-18201905 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 260-457 |
| Cow position: | chr25:26136602-26136806 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 261-379 |
| Cow position: | chr25:22154249-22154134 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 261-440 |
| Cow position: | chr25:22179133-22178951 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 25, 177 |
| Conread position: | 261-440 |
| Cow position: | chr25:33555830-33555641 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 135 |
| Conread position: | 261-448 |
| Cow position: | chr25:21547375-21547183 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 116, 23 |
| Conread position: | 262-440 |
| Cow position: | chr25:10585107-10585286 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 262-452 |
| Cow position: | chr25:36370041-36369841 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 262-452 |
| Cow position: | chr25:36375732-36375532 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 263-379 |
| Cow position: | chr25:13380379-13380495 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-440 |
| Cow position: | chr25:15999333-15999518 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 263-441 |
| Cow position: | chr25:11780484-11780307 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 103 |
| Conread position: | 263-441 |
| Cow position: | chr25:14210195-14210016 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 263-452 |
| Cow position: | chr25:22373268-22373468 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 264-440 |
| Cow position: | chr25:24669234-24669410 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 103, 148 |
| Conread position: | 267-440 |
| Cow position: | chr25:26224821-26224995 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 267-441 |
| Cow position: | chr25:14225582-14225395 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 268-440 |
| Cow position: | chr25:3141717-3141537 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 270-379 |
| Cow position: | chr25:7470593-7470488 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 270-440 |
| Cow position: | chr25:33100784-33100609 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 270-451 |
| Cow position: | chr25:35052406-35052601 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 270-452 |
| Cow position: | chr25:30462108-30462286 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 270-457 |
| Cow position: | chr25:20085790-20085594 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 271-371 |
| Cow position: | chr25:22848830-22848930 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-452 |
| Cow position: | chr25:18760500-18760686 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 105, 95 |
| Conread position: | 271-452 |
| Cow position: | chr25:33101402-33101583 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 150, 32 |
| Conread position: | 272-379 |
| Cow position: | chr25:19460286-19460179 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 272-397 |
| Cow position: | chr25:14833458-14833583 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 101 |
| Conread position: | 272-437 |
| Cow position: | chr25:22768428-22768255 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 272-440 |
| Cow position: | chr25:16921583-16921763 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 274-433 |
| Cow position: | chr25:33272844-33272674 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 275-438 |
| Cow position: | chr25:18720920-18721084 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 277-451 |
| Cow position: | chr25:27916207-27916036 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 277-452 |
| Cow position: | chr25:17724015-17724202 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 278-440 |
| Cow position: | chr25:21893537-21893372 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 7 |
| Conread position: | 279-440 |
| Cow position: | chr25:18551130-18551300 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 131 |
| Conread position: | 280-379 |
| Cow position: | chr25:32666456-32666358 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 280-386 |
| Cow position: | chr25:28939936-28940042 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 280-437 |
| Cow position: | chr25:23519834-23519995 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 280-439 |
| Cow position: | chr25:2362027-2361869 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 76 |
| Conread position: | 280-440 |
| Cow position: | chr25:12223766-12223605 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 280-440 |
| Cow position: | chr25:18491239-18491072 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 280-440 |
| Cow position: | chr25:20203110-20202947 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 280-441 |
| Cow position: | chr25:5808151-5807978 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 280-441 |
| Cow position: | chr25:11057417-11057246 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 280-445 |
| Cow position: | chr25:28945218-28945049 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 280-452 |
| Cow position: | chr25:26087722-26087542 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 163 |
| Conread position: | 280-457 |
| Cow position: | chr25:33663706-33663888 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 283-440 |
| Cow position: | chr25:36156011-36155852 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 127 |
| Conread position: | 283-441 |
| Cow position: | chr25:1763284-1763120 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 283-457 |
| Cow position: | chr25:6292768-6292584 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 284-379 |
| Cow position: | chr25:11096037-11096132 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 285-379 |
| Cow position: | chr25:12092816-12092722 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 79 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 285-440 |
| Cow position: | chr25:11957001-11956838 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 285-451 |
| Cow position: | chr25:2662591-2662420 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 150 |
| Conread position: | 287-379 |
| Cow position: | chr25:6812032-6812125 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 288-489 |
| Cow position: | chr25:10791625-10791827 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 116 |
| Conread position: | 289-441 |
| Cow position: | chr25:10303720-10303567 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 289-455 |
| Cow position: | chr25:14513299-14513133 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 132, 92 |
| Conread position: | 289-477 |
| Cow position: | chr25:36082061-36081875 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 296-439 |
| Cow position: | chr25:18877418-18877560 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 125, 79 |
| Conread position: | 296-445 |
| Cow position: | chr25:11855361-11855520 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 142 |
| Conread position: | 297-440 |
| Cow position: | chr25:24863053-24862909 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 301-452 |
| Cow position: | chr25:18646761-18646607 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 302-440 |
| Cow position: | chr25:447726-447869 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 314-439 |
| Cow position: | chr25:16065050-16064927 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 16 |
Show alignments to all cow chromosomes.