Cow genome map
| Conread name: | Ss1.1-rcbr0_004351.5 |
| Conread position: | 241-440 |
| Cow position: | chr26:5749681-5749884 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 244-453 |
| Cow position: | chr26:3930273-3930495 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 249-440 |
| Cow position: | chr26:5168648-5168446 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 250-476 |
| Cow position: | chr26:12027986-12028219 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 251-456 |
| Cow position: | chr26:7190488-7190703 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 252-447 |
| Cow position: | chr26:31711813-31712022 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 252-457 |
| Cow position: | chr26:17212445-17212228 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 256-440 |
| Cow position: | chr26:35449300-35449116 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 258-437 |
| Cow position: | chr26:19146142-19145955 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 122, 10 |
| Conread position: | 259-378 |
| Cow position: | chr26:26919778-26919659 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 259-379 |
| Cow position: | chr26:3758026-3757909 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 259-455 |
| Cow position: | chr26:1041245-1041037 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 260-437 |
| Cow position: | chr26:25737686-25737507 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 260-452 |
| Cow position: | chr26:7148064-7148264 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 261-379 |
| Cow position: | chr26:31205327-31205206 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 261-440 |
| Cow position: | chr26:12807071-12807247 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 261-452 |
| Cow position: | chr26:23623807-23624003 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 112, 22 |
| Conread position: | 262-366 |
| Cow position: | chr26:25171268-25171166 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 262-452 |
| Cow position: | chr26:586639-586838 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 95, 6 |
| Conread position: | 263-438 |
| Cow position: | chr26:27768510-27768322 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 263-440 |
| Cow position: | chr26:3192209-3192390 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 263-456 |
| Cow position: | chr26:21418214-21418416 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 263-473 |
| Cow position: | chr26:34314917-34314712 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 264-445 |
| Cow position: | chr26:23112275-23112082 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 264-452 |
| Cow position: | chr26:32830319-32830122 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 21 |
| Conread position: | 264-461 |
| Cow position: | chr26:34026795-34027008 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 266-379 |
| Cow position: | chr26:6741511-6741625 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 266-441 |
| Cow position: | chr26:16795975-16796158 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 267-457 |
| Cow position: | chr26:23848561-23848757 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 268-431 |
| Cow position: | chr26:16797732-16797905 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 268-431 |
| Cow position: | chr26:21320179-21320008 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 268-437 |
| Cow position: | chr26:3071749-3071919 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 146 |
| Conread position: | 268-437 |
| Cow position: | chr26:12992580-12992400 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 100, 15 |
| Conread position: | 268-438 |
| Cow position: | chr26:9535745-9535573 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 17 |
| Conread position: | 268-440 |
| Cow position: | chr26:19459929-19459746 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 268-441 |
| Cow position: | chr26:4854777-4854597 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 268-455 |
| Cow position: | chr26:33074263-33074460 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 268-457 |
| Cow position: | chr26:28247082-28246883 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 269-425 |
| Cow position: | chr26:16550219-16550056 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 271-376 |
| Cow position: | chr26:31406384-31406279 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-410 |
| Cow position: | chr26:18679476-18679334 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 95, 45 |
| Conread position: | 271-440 |
| Cow position: | chr26:20291463-20291639 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 271-452 |
| Cow position: | chr26:7224121-7224301 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 271-452 |
| Cow position: | chr26:34114493-34114303 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 272-438 |
| Cow position: | chr26:14293379-14293205 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 272-440 |
| Cow position: | chr26:28202525-28202706 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 272-452 |
| Cow position: | chr26:20260807-20260622 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 273-416 |
| Cow position: | chr26:5418299-5418445 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 273-437 |
| Cow position: | chr26:28605-28775 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 274-445 |
| Cow position: | chr26:27482334-27482518 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 274-481 |
| Cow position: | chr26:16423820-16423621 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 277-440 |
| Cow position: | chr26:16585651-16585488 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 73 |
| Conread position: | 277-461 |
| Cow position: | chr26:21822823-21823015 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 279-452 |
| Cow position: | chr26:25526469-25526290 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 280-378 |
| Cow position: | chr26:15908540-15908638 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-440 |
| Cow position: | chr26:21279740-21279908 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 121 |
| Conread position: | 280-441 |
| Cow position: | chr26:8306619-8306451 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 280-441 |
| Cow position: | chr26:25663327-25663500 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 280-452 |
| Cow position: | chr26:9099312-9099491 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 280-457 |
| Cow position: | chr26:33253096-33253280 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 285-379 |
| Cow position: | chr26:35678064-35677970 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 285-440 |
| Cow position: | chr26:31382530-31382373 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 65, 93 |
| Conread position: | 285-457 |
| Cow position: | chr26:754694-754875 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 287-449 |
| Cow position: | chr26:99182-99009 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 289-445 |
| Cow position: | chr26:12893218-12893379 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 113 |
| Conread position: | 297-452 |
| Cow position: | chr26:28244035-28243870 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.