Cow genome map

Conread name: Ss1.1-rcbr0_006154.5

Conread position: 1-151
Cow position: chr12:37169952-37170102 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 14

Conread position: 1-177
Cow position: chr12:42879688-42879510 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 60

Conread position: 1-209
Cow position: chr12:17031609-17031405 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 26, 17

Conread position: 1-209
Cow position: chr12:44622349-44622144 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 14

Conread position: 1-231
Cow position: chr12:28748936-28748706 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 9

Conread position: 1-232
Cow position: chr12:19691237-19691465 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 23, 175

Conread position: 1-232
Cow position: chr12:29770578-29770802 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 14

Conread position: 1-232
Cow position: chr12:29995470-29995690 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 99, 23

Conread position: 1-233
Cow position: chr12:26317459-26317236 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 141

Conread position: 1-234
Cow position: chr12:25561364-25561139 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 60

Conread position: 1-234
Cow position: chr12:32169534-32169305 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 17

Conread position: 1-234
Cow position: chr12:40910295-40910522 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr12:6241313-6241071 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 152

Conread position: 1-241
Cow position: chr12:8710815-8710593 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr12:18020852-18020615 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 14, 90

Conread position: 1-241
Cow position: chr12:19502434-19502658 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 58

Conread position: 1-241
Cow position: chr12:32715039-32714804 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 98, 156

Conread position: 1-241
Cow position: chr12:34148367-34148589 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 18, 14

Conread position: 1-242
Cow position: chr12:3579280-3579041 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 66, 77

Conread position: 1-242
Cow position: chr12:9143381-9143154 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 24, 48

Conread position: 1-242
Cow position: chr12:39465573-39465339 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 26, 105

Conread position: 1-242
Cow position: chr12:39486418-39486190 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 20, 14

Conread position: 1-243
Cow position: chr12:27037456-27037688 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 75

Conread position: 1-250
Cow position: chr12:35378196-35377952 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 146

Conread position: 1-252
Cow position: chr12:11056869-11056626 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 68

Conread position: 1-263
Cow position: chr12:45820372-45820626 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 14

Conread position: 1-266
Cow position: chr12:20071578-20071845 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 14

Conread position: 2-234
Cow position: chr12:38454902-38454687 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 57

Conread position: 2-241
Cow position: chr12:15089509-15089256 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 18, 13

Conread position: 4-232
Cow position: chr12:26782876-26782652 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 57

Conread position: 4-241
Cow position: chr12:6720318-6720081 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 21, 168

Conread position: 4-241
Cow position: chr12:27562836-27563075 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 27

Conread position: 4-249
Cow position: chr12:17881853-17881619 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 88

Conread position: 5-241
Cow position: chr12:18577829-18577611 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 10

Conread position: 7-209
Cow position: chr12:18518661-18518456 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 174

Conread position: 7-240
Cow position: chr12:18420933-18421164 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 13, 159

Conread position: 7-252
Cow position: chr12:42181143-42181391 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 17

Conread position: 8-234
Cow position: chr12:30170656-30170436 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 17, 52

Conread position: 14-242
Cow position: chr12:17001240-17001019 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 6, 36

Conread position: 15-208
Cow position: chr12:36544663-36544858 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 131

Conread position: 16-236
Cow position: chr12:8943247-8943454 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 134, 9

Conread position: 17-233
Cow position: chr12:22515751-22515970 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 109

Conread position: 18-234
Cow position: chr12:17080237-17080027 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 43

Conread position: 18-234
Cow position: chr12:18388313-18388513 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 37

Conread position: 18-234
Cow position: chr12:29411512-29411720 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 7, 145

Conread position: 18-241
Cow position: chr12:30745698-30745475 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 9, 109

Conread position: 18-252
Cow position: chr12:28471616-28471390 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 58

Conread position: 19-241
Cow position: chr12:24211389-24211178 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 58

Conread position: 21-242
Cow position: chr12:6164049-6164268 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 99

Conread position: 22-225
Cow position: chr12:4116461-4116271 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 83, 38

Conread position: 22-241
Cow position: chr12:3510532-3510325 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 22-241
Cow position: chr12:5714602-5714390 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 155

Conread position: 22-241
Cow position: chr12:15429624-15429838 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 53

Conread position: 22-241
Cow position: chr12:18766001-18766219 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 30

Conread position: 22-241
Cow position: chr12:30476454-30476239 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 141

Conread position: 22-241
Cow position: chr12:30605193-30605394 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 25

Conread position: 22-241
Cow position: chr12:32391820-32391607 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 48

Conread position: 22-241
Cow position: chr12:33323524-33323737 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 40

Conread position: 22-241
Cow position: chr12:37770849-37770637 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 161

Conread position: 22-242
Cow position: chr12:5635481-5635687 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 22-242
Cow position: chr12:19372135-19372345 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 55

Conread position: 22-244
Cow position: chr12:24663086-24662874 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 39

Conread position: 23-228
Cow position: chr12:18021563-18021368 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 53

Conread position: 23-232
Cow position: chr12:25820459-25820662 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 40

Conread position: 23-241
Cow position: chr12:28650928-28650714 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 49, 36

Conread position: 23-253
Cow position: chr12:25456090-25455863 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 77, 137

Conread position: 23-261
Cow position: chr12:41581085-41580853 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 39

Conread position: 26-232
Cow position: chr12:17702258-17702462 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 115

Conread position: 26-241
Cow position: chr12:5906024-5905819 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 68, 114

Conread position: 32-231
Cow position: chr12:30803178-30802983 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 69

Conread position: 33-237
Cow position: chr12:4809264-4809071 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 63, 35

Conread position: 33-242
Cow position: chr12:3994919-3994710 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 66, 140

Conread position: 35-237
Cow position: chr12:4008324-4008515 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 17

Conread position: 36-233
Cow position: chr12:18937364-18937157 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 37-232
Cow position: chr12:26223030-26223213 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 37-234
Cow position: chr12:35771064-35771263 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 25

Conread position: 38-241
Cow position: chr12:15358290-15358090 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 64, 37

Conread position: 40-234
Cow position: chr12:13156630-13156443 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 36

Conread position: 42-241
Cow position: chr12:42167602-42167407 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 126

Conread position: 43-241
Cow position: chr12:17008155-17007959 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 52, 25

Conread position: 44-232
Cow position: chr12:3906425-3906239 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 6, 33

Conread position: 53-241
Cow position: chr12:6185956-6186139 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 18

Conread position: 89-234
Cow position: chr12:41083974-41083834 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 72

Conread position: 97-240
Cow position: chr12:5135040-5134902 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 69

Conread position: 101-231
Cow position: chr12:27563486-27563615 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 101-242
Cow position: chr12:25805219-25805349 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 107-225
Cow position: chr12:12976292-12976403 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.