Cow genome map
| Conread name: | Ss1.1-rcbr0_006154.5 |
| Conread position: | 1-169 |
| Cow position: | chr15:53716491-53716660 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 1-225 |
| Cow position: | chr15:14505487-14505702 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 1-230 |
| Cow position: | chr15:27900453-27900223 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 1-230 |
| Cow position: | chr15:50302239-50302461 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 1-233 |
| Cow position: | chr15:38877247-38877022 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 1-234 |
| Cow position: | chr15:1722793-1722568 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 1-234 |
| Cow position: | chr15:14870797-14871028 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 120 |
| Conread position: | 1-234 |
| Cow position: | chr15:24305425-24305196 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 121 |
| Conread position: | 1-234 |
| Cow position: | chr15:40957633-40957861 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 1-237 |
| Cow position: | chr15:16307479-16307701 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-237 |
| Cow position: | chr15:41125515-41125282 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 1-238 |
| Cow position: | chr15:24045042-24044812 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 172 |
| Conread position: | 1-240 |
| Cow position: | chr15:7456753-7456985 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 1-241 |
| Cow position: | chr15:1330046-1329810 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 12, 173 |
| Conread position: | 1-241 |
| Cow position: | chr15:4093876-4093635 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 1-241 |
| Cow position: | chr15:12304695-12304930 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 172 |
| Conread position: | 1-241 |
| Cow position: | chr15:13515423-13515661 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 172 |
| Conread position: | 1-241 |
| Cow position: | chr15:16476682-16476456 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 1-241 |
| Cow position: | chr15:22532309-22532530 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 1-241 |
| Cow position: | chr15:25208700-25208476 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 18 |
| Conread position: | 1-241 |
| Cow position: | chr15:25585033-25584800 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 64 |
| Conread position: | 1-241 |
| Cow position: | chr15:29340120-29340351 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 1-241 |
| Cow position: | chr15:30047489-30047250 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 172 |
| Conread position: | 1-241 |
| Cow position: | chr15:33306167-33306397 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr15:46868658-46868424 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 161 |
| Conread position: | 1-243 |
| Cow position: | chr15:36773641-36773403 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-244 |
| Cow position: | chr15:42789091-42788858 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-253 |
| Cow position: | chr15:3700230-3699980 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 2-205 |
| Cow position: | chr15:26404340-26404531 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 2-234 |
| Cow position: | chr15:38883204-38883438 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 157 |
| Conread position: | 2-235 |
| Cow position: | chr15:21907993-21908220 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 2-240 |
| Cow position: | chr15:41360892-41360674 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 3-241 |
| Cow position: | chr15:22136742-22136971 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 3-241 |
| Cow position: | chr15:35642078-35642309 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 5-234 |
| Cow position: | chr15:52611368-52611595 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 5-236 |
| Cow position: | chr15:10456954-10456726 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 5-241 |
| Cow position: | chr15:11658512-11658276 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 8-234 |
| Cow position: | chr15:49257927-49258159 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 12-234 |
| Cow position: | chr15:23798463-23798238 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 12-241 |
| Cow position: | chr15:31857658-31857881 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 14-241 |
| Cow position: | chr15:24967861-24968081 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 16 |
| Conread position: | 14-241 |
| Cow position: | chr15:44051432-44051208 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 160 |
| Conread position: | 14-242 |
| Cow position: | chr15:36259535-36259312 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 18-197 |
| Cow position: | chr15:16261387-16261562 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 44 |
| Conread position: | 18-234 |
| Cow position: | chr15:11011529-11011327 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 18-240 |
| Cow position: | chr15:6530774-6530555 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 18-241 |
| Cow position: | chr15:23702853-23703062 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 18-263 |
| Cow position: | chr15:30985708-30985470 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 44 |
| Conread position: | 19-234 |
| Cow position: | chr15:26919200-26918992 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 5, 36 |
| Conread position: | 19-235 |
| Cow position: | chr15:6586641-6586430 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 19-239 |
| Cow position: | chr15:22553467-22553237 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 19-241 |
| Cow position: | chr15:50322669-50322884 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 44 |
| Conread position: | 22-169 |
| Cow position: | chr15:36353747-36353896 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 22-223 |
| Cow position: | chr15:23275621-23275809 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 22-234 |
| Cow position: | chr15:9871338-9871128 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 139 |
| Conread position: | 22-234 |
| Cow position: | chr15:40009575-40009368 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 153 |
| Conread position: | 22-235 |
| Cow position: | chr15:1083297-1083089 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 22-241 |
| Cow position: | chr15:5420805-5420593 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 137 |
| Conread position: | 22-241 |
| Cow position: | chr15:6970066-6970275 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 165, 48 |
| Conread position: | 22-241 |
| Cow position: | chr15:13387155-13387372 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 22-241 |
| Cow position: | chr15:47105120-47105326 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 22-259 |
| Cow position: | chr15:23696832-23696609 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 23-232 |
| Cow position: | chr15:608226-608430 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 23-239 |
| Cow position: | chr15:21389087-21388878 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 23-240 |
| Cow position: | chr15:1804255-1804040 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 35 |
| Conread position: | 23-241 |
| Cow position: | chr15:24128108-24128319 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 26-241 |
| Cow position: | chr15:10335838-10336044 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 13 |
| Conread position: | 26-241 |
| Cow position: | chr15:21522869-21523079 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 28-241 |
| Cow position: | chr15:39082295-39082490 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 31-234 |
| Cow position: | chr15:16639874-16640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 33-233 |
| Cow position: | chr15:41045496-41045686 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 33-234 |
| Cow position: | chr15:36422748-36422939 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 34-230 |
| Cow position: | chr15:23487077-23486893 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 34-241 |
| Cow position: | chr15:36621500-36621707 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 65, 127 |
| Conread position: | 36-232 |
| Cow position: | chr15:18720402-18720594 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 139 |
| Conread position: | 37-234 |
| Cow position: | chr15:16439737-16439543 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 44-232 |
| Cow position: | chr15:38103793-38103610 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 60-241 |
| Cow position: | chr15:26896596-26896422 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 63-233 |
| Cow position: | chr15:20081881-20082041 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 67-234 |
| Cow position: | chr15:41583035-41583192 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 70-234 |
| Cow position: | chr15:30316457-30316307 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 89-222 |
| Cow position: | chr15:40999921-40999795 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 97-234 |
| Cow position: | chr15:47843954-47843825 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 108-240 |
| Cow position: | chr15:24822212-24822087 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.