Cow genome map
| Conread name: | Ss1.1-rcbr0_006154.5 |
| Conread position: | 1-209 |
| Cow position: | chr20:24069881-24069676 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 1-210 |
| Cow position: | chr20:25162050-25162258 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-212 |
| Cow position: | chr20:19363287-19363496 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 174 |
| Conread position: | 1-232 |
| Cow position: | chr20:12420543-12420769 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-233 |
| Cow position: | chr20:3599321-3599539 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 1-233 |
| Cow position: | chr20:7426122-7426338 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 1-233 |
| Cow position: | chr20:23792679-23792458 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-233 |
| Cow position: | chr20:28441402-28441177 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 1-234 |
| Cow position: | chr20:11550444-11550217 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-234 |
| Cow position: | chr20:39019771-39019545 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 160 |
| Conread position: | 1-236 |
| Cow position: | chr20:7438776-7439001 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 165 |
| Conread position: | 1-236 |
| Cow position: | chr20:8556194-8556426 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 1-239 |
| Cow position: | chr20:23505903-23505673 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 1-240 |
| Cow position: | chr20:28605285-28605049 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr20:3255111-3254891 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 228, 53 |
| Conread position: | 1-241 |
| Cow position: | chr20:9412563-9412335 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 24, 119 |
| Conread position: | 1-241 |
| Cow position: | chr20:12581879-12582104 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 114 |
| Conread position: | 1-241 |
| Cow position: | chr20:13269696-13269466 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr20:14806962-14806729 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 1-241 |
| Cow position: | chr20:14980434-14980672 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr20:16935236-16935460 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 1-241 |
| Cow position: | chr20:22235382-22235158 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 1-241 |
| Cow position: | chr20:25009557-25009800 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-242 |
| Cow position: | chr20:33363593-33363362 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 1-245 |
| Cow position: | chr20:18320716-18320957 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 1-245 |
| Cow position: | chr20:39398556-39398326 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 1-247 |
| Cow position: | chr20:28982777-28982533 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 1-252 |
| Cow position: | chr20:23870744-23870985 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 2-241 |
| Cow position: | chr20:31740145-31740375 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 3-241 |
| Cow position: | chr20:38768387-38768610 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 5-241 |
| Cow position: | chr20:23846594-23846829 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 20, 173 |
| Conread position: | 5-242 |
| Cow position: | chr20:26996601-26996372 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 6-234 |
| Cow position: | chr20:19312997-19313215 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-241 |
| Cow position: | chr20:10208878-10208645 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 85 |
| Conread position: | 7-241 |
| Cow position: | chr20:14735736-14735519 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 18-241 |
| Cow position: | chr20:3606902-3607111 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 18-252 |
| Cow position: | chr20:6240462-6240698 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 53 |
| Conread position: | 19-234 |
| Cow position: | chr20:5636538-5636330 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 19-236 |
| Cow position: | chr20:13025557-13025760 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 67 |
| Conread position: | 22-226 |
| Cow position: | chr20:39518060-39517861 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 83, 31 |
| Conread position: | 22-237 |
| Cow position: | chr20:8308073-8307860 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 53 |
| Conread position: | 22-241 |
| Cow position: | chr20:22065125-22064913 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 22-241 |
| Cow position: | chr20:40511703-40511915 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 22-242 |
| Cow position: | chr20:15312723-15312501 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 157 |
| Conread position: | 22-260 |
| Cow position: | chr20:32084026-32084262 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 139 |
| Conread position: | 23-234 |
| Cow position: | chr20:22313108-22313308 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 23-239 |
| Cow position: | chr20:22704347-22704133 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 23-241 |
| Cow position: | chr20:13967204-13967415 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 24-234 |
| Cow position: | chr20:35797663-35797455 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 58, 132 |
| Conread position: | 25-239 |
| Cow position: | chr20:11482084-11482294 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 26-232 |
| Cow position: | chr20:8578298-8578096 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 26-241 |
| Cow position: | chr20:20203267-20203059 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 26-241 |
| Cow position: | chr20:38578711-38578914 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 29-241 |
| Cow position: | chr20:36207854-36207645 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 44, 125 |
| Conread position: | 33-241 |
| Cow position: | chr20:11542238-11542440 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 140 |
| Conread position: | 33-243 |
| Cow position: | chr20:36010838-36010630 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 36-234 |
| Cow position: | chr20:5826983-5826787 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 36-237 |
| Cow position: | chr20:7211079-7210883 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 37-242 |
| Cow position: | chr20:6848669-6848463 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 40-233 |
| Cow position: | chr20:36331387-36331577 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 121 |
| Conread position: | 42-215 |
| Cow position: | chr20:7363000-7362835 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 45-241 |
| Cow position: | chr20:6258030-6258221 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 24 |
| Conread position: | 50-248 |
| Cow position: | chr20:18837130-18837325 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 51-240 |
| Cow position: | chr20:10235881-10235696 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 52-253 |
| Cow position: | chr20:27407851-27408048 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 63-241 |
| Cow position: | chr20:13752245-13752083 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 63-249 |
| Cow position: | chr20:20242106-20241935 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 63-253 |
| Cow position: | chr20:22445624-22445805 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 95-241 |
| Cow position: | chr20:4205946-4205806 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 98-241 |
| Cow position: | chr20:13994789-13994652 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 74 |
| Conread position: | 106-241 |
| Cow position: | chr20:4781533-4781405 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 108-237 |
| Cow position: | chr20:32847321-32847200 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 111-241 |
| Cow position: | chr20:5702711-5702588 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.